Cohnella candidum: EAV92_16690
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Entry
EAV92_16690 CDS
T05696
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
coh
Cohnella candidum
Pathway
coh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
coh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EAV92_16690 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
coh03021
]
EAV92_16690 (rpoB)
03400 DNA repair and recombination proteins [BR:
coh03400
]
EAV92_16690 (rpoB)
Enzymes [BR:
coh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EAV92_16690 (rpoB)
Transcription machinery [BR:
coh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EAV92_16690 (rpoB)
DNA repair and recombination proteins [BR:
coh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EAV92_16690 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AYQ74057
UniProt:
A0A3G3K1Y0
LinkDB
All DBs
Position
complement(3646208..3649753)
Genome browser
AA seq
1181 aa
AA seq
DB search
MAGHLVQYGRRTRRSYARINEVLDVPNLIEIQQQSYQKFLDEGLREIFQDISPIQDFTGN
LVLEFIDYSLGEPKYSVDESKERDVTYAAPLRVKVRLLNKETGEVKEQEVFMGDFPLMTE
TGTFIINGAERVIVSQLVRSPSVYYSTKVDKNGKKTYTATVIPNRGAWLELETDAKDIVY
VRIDRTRKIPVTVLLRALGFGTDAEILDLLGQDEYIRNTLEKDNTDSTEKALIEIYERLR
PGEPPTLENARSLLIARFFDPKRYDLANVGRYKINKKLHIKNRLFDQRLAETLVDPSTGE
ILAEAGQMIDRRLLDQILPMLEKNVGFKTYRVVGGVNEADDIPLQTISVFSPIEDGKVVK
LIANGNIDKSVKHITPADIISSINYFMNLLHGIGTTDDIDHLGNRRLRSVGELLQNQFRI
GLSRMERVVRERMSIQDQNAITPQALINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELTH
KRRLSALGPGGLTRERAGFEVRDVHPSHYGRMCPIETPEGPNIGLINSLSSFARINEYGF
IEAPYRKVDPKTNKVTDEIVYMTADEEYNYIIAQANVKLNDDGSFVEDSVIVRYNKQADN
ILQMPSDRVDYIDVSPKQVVSVATAMIPFLENDDSNRALMGSNMQRQAVPLLVPDAPYVG
TGMEHKSAKDSGVCIVSKYDGVIERVGANEIWLRRIETVDGKEVKGDLVKYKLQKFMRSN
QGTCINQRPICKKGEIVKKGDILADGPSTDQGELALGRNVVVAFMTWEGYNYEDAILLSE
KLVREDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEIGAG
DILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGTDGIVVDVKVFTRENGD
ELPPGVNQLVRVYIAQKRKISEGDKMAGRHGNKGVIARILPEEDMPFLPDGTPVQVVLNP
LGVPSRMNIGQVLEVHLGMACRYLGIRAATPVFDGARENDVFDTMEEAGMQRNGKTKLYD
GRTGEPFEREVTVGVMYMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENVPEPGVPESFKVLIKELQSLG
MDVKILTENEEEIEMKESDDEDDAAGDKLNLNLEGSEVGVE
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatcttgttcagtacggccgtcgcacgcgacgcagctatgcccgcatcaat
gaggtgttggacgtcccgaacctgatcgaaatccagcagcaatcgtaccagaagtttttg
gacgagggcttgcgggagattttccaggacatttcgccgatccaggatttcacggggaac
ctcgtgctggagtttatcgactacagcttgggagaacccaaatattccgtcgacgaatcc
aaggaacgcgatgtcacctatgcggctccgctgcgtgtaaaagtgcgtctgctcaacaag
gaaaccggcgaagtgaaggagcaggaagtgttcatgggcgattttccgctcatgacggag
accggcactttcatcatcaacggcgcggaacgcgttatcgtcagccaattggttcgctcc
ccgagcgtctactacagcacgaaagtggacaaaaacgggaagaaaacgtacaccgcgacg
gtgatcccgaaccgcggcgcttggcttgaactcgagacggacgcgaaggacatcgtgtac
gtccggatcgaccgtacccggaaaatcccggtcacggtgcttttgcgcgcattgggcttc
ggtaccgacgcggagattttggacctgctcggacaggacgagtatatccgcaacacgctg
gagaaggacaacaccgactccacggagaaagcgctcatcgaaatttacgaacgccttcgc
ccgggcgaaccgccgacgcttgagaacgcgcgcagcttgctgatcgcacgattcttcgat
ccgaagcgttacgacctggccaacgtaggccgctataaaatcaataagaagctgcatatc
aagaaccgcctgtttgaccagcgcttggccgagactctcgtggatccgtccacgggcgaa
atcctggccgaagccggccaaatgatcgaccgtcgtctgctcgatcaaattctcccgatg
ctggagaagaacgtcgggttcaagacctaccgcgtagtcggcggcgtgaacgaagcggac
gatattccgctgcagacgatcagcgtattctcgccgatcgaagacggcaaagtcgtgaag
ctgatcgccaacggcaacatcgacaaatcggtgaagcacatcacgcccgccgatattatt
tcttcgatcaactatttcatgaatttgcttcacggcatcggcacgacggacgacatcgac
catttgggcaaccgccgtctgcgttccgtcggcgaactgctgcagaaccagttccgtatc
ggtttgtcccgtatggaacgcgtcgttcgcgaaagaatgtcgattcaggaccagaacgcg
atcacgccgcaggccctgatcaacatccgtccggtcatcgccgcgatcaaggagtttttc
ggctcctcgcagctgtcccagttcatggaccaaacgaacccgcttgccgagcttacgcat
aagcgccgtttgtccgctctcggacccggcggcttgacgcgcgagcgcgcaggcttcgaa
gtccgcgacgtccatccgtcccactacggccggatgtgcccgatcgagacgcctgaaggt
ccgaacatcggtctgatcaactctttgtcctcgttcgcgcggatcaacgagtacggcttc
atcgaagctccgtaccgcaaggtggatccgaagacgaacaaagtcaccgacgagatcgtc
tacatgacggcggacgaagagtacaactacatcatcgctcaggcgaacgtaaagctgaac
gacgacggctccttcgttgaagacagcgtcatcgtgcgttacaacaagcaggccgacaac
attctgcaaatgccgagcgaccgcgtcgactacatcgacgtttcgccgaagcaggtcgta
tccgtggcgacggcgatgatcccgttcctcgagaacgacgactccaaccgcgcgctcatg
ggttcgaacatgcaacggcaggctgtaccgctgctcgtgccggacgccccgtacgtcgga
accggtatggagcacaagtccgcgaaggactccggggtatgtattgtatccaaatacgac
ggcgtcattgaacgcgtcggcgccaacgagatctggcttcgccggatcgagacggtagac
ggcaaggaagtcaaaggcgacctcgtcaaatacaagcttcagaaattcatgcgttccaac
caagggacctgcattaaccagcgcccgatctgcaagaagggcgagatcgtcaagaaaggc
gacatccttgccgacggtccttctaccgaccagggcgaactggcgctcggccgcaacgtc
gtcgtcgcgttcatgacctgggaaggttacaactacgaggatgcgatcctgctctccgag
aagcttgtccgcgaagacgtctacacctcgatccatatcgaggagtatgagtccgaagcg
cgcgacacgaagctcggaccggaagaaatcacgcgcgacatcccgaacgtcggggaagac
gcgctgcgcaatctcgacgagcgcggcatcatccgcgtcggcgccgagatcggcgcgggc
gacattctcgtcggcaaggttacgccgaagggcgttaccgagctgacggcggaagagcgc
ctgctgcatgcgatcttcggcgagaaggctcgcgaagtccgcgacacctcgctgcgcgtg
ccgcacggtaccgacgggatcgtcgtcgacgtgaaagtattcacccgcgagaacggcgac
gaattgccgcctggcgtgaaccagctggttcgcgtatacatcgcgcagaagcgtaaaatt
tccgaaggcgacaaaatggcgggacgccacggcaacaagggcgttatcgcacggatcctt
ccggaagaagatatgcctttcctgccggacggcacgccggttcaagtcgtattgaacccg
ctgggcgttccttcccggatgaacatcgggcaggtgctcgaagtccacttgggcatggct
tgccgttacctcggcatccgcgccgcgacgccggtattcgacggcgcgcgcgaaaacgac
gttttcgatacgatggaagaagccggcatgcagcgcaacggtaaaacgaagctgtatgat
ggacgcacgggcgagccgttcgagcgcgaagttaccgtgggcgtcatgtacatgattaag
ctggcgcacatggtcgacgacaaaatccatgcccgttcgaccggtccgtactcgctcgtt
acgcagcagcctctgggcggtaaagcccagttcggcggccagcgcttcggggagatggaa
gtttgggcgctcgaggcatacggcgccgcgtacacgctgcaggaaattttgaccgtcaaa
tccgacgacgtcgtcggccgcgtcaaaacgtacgaatccatcgtcaagggcgagaatgtt
ccggagccgggcgttccggaatcgttcaaagtattgatcaaggagcttcaaagtctcggg
atggacgtcaagatcttgacggagaacgaagaagagatcgagatgaaagagtccgacgac
gaagacgatgccgcaggcgacaagctgaacctcaatctcgagggctcggaagtcggcgtg
gaatag
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integrated database retrieval system
