Cohnella candidum: EAV92_18420
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Entry
EAV92_18420 CDS
T05696
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
coh
Cohnella candidum
Pathway
coh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EAV92_18420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coh03019
]
EAV92_18420
Enzymes [BR:
coh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EAV92_18420
Messenger RNA biogenesis [BR:
coh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EAV92_18420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25_NTPase-like
P-loop_SecA
Utp25_C
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AYQ74369
UniProt:
A0A3G3K3N3
LinkDB
All DBs
Position
complement(4027754..4028905)
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AA seq
383 aa
AA seq
DB search
MTFEDLKLNPAILKALRQENYAKPTPIQEQAIPAVLAGKDVFGCAQTGTGKTAAFSLPII
HKLSQPGKPNGPRRIRSLILTPTRELALQIADNVKAYSRNLNLRCLAIVGGVAQTPQERE
LQQGTDILIATPGRLIDLMNQKHADLSHVEILVLDEADRMLDMGFIHDVKKILAKVPAKR
QTLFFSATMPPEISELVRTLLKDPVKVEITPVSSTAERIQQSVYLVDKENKMSLLNHLLK
DHPEMESVLVFTRTKHGADRVARGLNRSNVAAQAIHGDKSQNARQTALNNFKNGTTRVLV
ATDIAARGIDIDELSHVINYNLPNVPETYVHRIGRTGRAGNSGTAISFCETDELPYLKDI
EKLTKKPIPQVKEHPFPMVGSKA
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgaagatttgaaattgaaccccgccatcctgaaagccctccgacaggagaat
tacgcgaagccgacgcctatccaggagcaggcgattccggccgtgctggcgggcaaggac
gtgttcggctgcgcgcagaccggcacgggcaagacggccgcgttctcgctgccgattatc
cacaaactcagccagccgggtaaaccgaatggcccccgccgcatccgctccctgatcttg
acgccgacgagggagttggccctgcaaatcgccgataacgtgaaagcctacagccggaat
ctcaatctccgctgcctggccatcgtcggcggcgttgcccaaacgccgcaggagagggag
ctgcagcagggcaccgatatcctgatcgccacgcccgggcggctgatcgatctgatgaac
cagaagcatgccgatctttcgcatgtggagatcctcgttctggacgaagccgaccggatg
ctggacatgggcttcattcacgacgtgaagaagattctcgccaaagttccggccaagcgg
cagacgctttttttctccgccacgatgccgccggaaatctccgagctggttcgaacgctg
cttaaagacccggtgaaagtggagatcaccccggtgtcttccacggcggagcggattcag
caatccgtctacctggtcgacaaggaaaacaaaatgagcctgctgaaccatctgctgaag
gaccatccggaaatggaatcggtgctcgtgttcacccggaccaaacacggagcggaccgc
gtcgcgcgggggctgaaccgctcgaacgtcgccgcgcaggccattcacggagacaagtcg
caaaacgcgcgccagacggcgctgaacaattttaaaaacggaacgacgcgcgtcctggtg
gccaccgacatcgcggccaggggaatcgacatcgacgagctgtcgcacgtcatcaactac
aacctccccaacgtgccggaaacctacgtccatcgaatcgggcgtacgggccgggcgggg
aacagcggaaccgcgatctcattttgcgaaacggacgagctcccttacctcaaagacatc
gagaagctgacgaagaaaccgatcccgcaggtgaaggaacaccctttcccgatggtcggc
tcgaaagcttaa
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