Cohnella candidum: EAV92_19780
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Entry
EAV92_19780 CDS
T05696
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
coh
Cohnella candidum
Pathway
coh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
coh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EAV92_19780 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
coh03400
]
EAV92_19780 (mfd)
Enzymes [BR:
coh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EAV92_19780 (mfd)
DNA repair and recombination proteins [BR:
coh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EAV92_19780 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
DUF4755
SecA_DEAD
UB2H
Motif
Other DBs
NCBI-ProteinID:
AYQ74610
UniProt:
A0A3G3K2K6
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All DBs
Position
4284601..4288122
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AA seq
1173 aa
AA seq
DB search
MNPLLQTIATDSDLVSIMNGIRGGMREQLVAGLSGSARQAVVAAMFRELQKPILIVTHNM
FSAQKMADDLQECLNDGEVLLYPANELIAAETAISSPETSARRLEVLLKLAEGFRGVVVV
PFAGLRRFQPDRQTLANSRIDLKVGGTKPLDEFLKDMVALGYERVDRVEQKGHFSVRGGI
VDFFPLASSIAYRVEWFDDEIDSIRTFDPTDQRSIDKLDAYSVGPCRELIADARRFGAAA
QHAYDLMQKQLEKMSDRQAKERLESEISREIDLLRQNVYFSEIYKYVSLLYPERQTLLDY
VPKDTLLIMDEPNRLGETAKQLERDESEWSVHLLQQGKTLPGFTLAVPAEQAMYPKQFQV
VYLSLFVRQIPHTQPQNIVNFVCRSMQNFHGQMNVLKAEMERWRKSGAHILMLAGSPERA
ERIRRVLDDYHIEAPEILLGNLQSGFELPSVKLVVITEGEMFTQKQRKARRVDRHLDNAE
RIKSYTELKVGDYVVHQNHGIGKYLGIGTMEVAGIHKDYLHILYAGGDRLSVPVEQFDLI
QKYIGSEEKEPKVSKLGGQDWNRVKSKVRSSVKDIADDLIKLYAARQETKGFAFGEDTTY
QQEFEAMFPYEETNDQLRTIREIKADMQLPRPMDRLLCGDVGYGKTEVAVRAAFKAAIEG
KQVAVLVPTTILAQQHYETFRERFSGYPFNIKVMSRFRSRKEQNDAIKGLKAGTVDVVIG
THRLLSQDVIFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSMLG
VRDLSVIETPPENRFPVQTYVVEYSPTLVREAIERELARDGQVYYLFNRVQGIYQMAEQI
SALVPDARVAVGHGQMSEQELERTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHDAD
KMGLSQLYQLRGRVGRSSRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMRD
LAIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEINQRKSEWGGAAVPVQPVNTQLDLGVD
AYLPPDYIYDSIQKIEIYKKVAGSTTLEDVSDLFDELVDRFGDPPKAVLNLLAVARLKVY
GRRYGVESIVHRGDDVTLKFEDRRASEVEGPKLKALEAKFQGRLLVVLSSQQLSAKLKTR
GLGEDALLALVEEFLVQYREVLKSKGELQDVAP
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgaacccgctactccagacgatcgccacggattccgatctggtcagcatcatgaacggc
attcgcggcggaatgagagaacagctggttgccgggttgtcgggctccgcgcggcaggcg
gtcgtggccgccatgttccgggaactgcaaaaaccgattctgatcgtaacgcacaacatg
ttctccgcgcagaagatggcggatgacctgcaggagtgtctgaacgacggcgaagtgctc
ctgtatccggccaacgagctgatcgcggcggagaccgcgatatcgagtcccgaaacttcg
gccaggcggctggaagtgctgctcaagctggcggaaggattccgcggggtggtcgtcgta
cctttcgccggattgcggcggttccagccggatcgacagacgctggcgaactcccgcatc
gaccttaaggtcggagggacgaaaccgctcgacgaatttctcaaagacatggtggctctt
ggctacgaacgcgtggaccgcgtcgagcagaagggccatttcagcgtgcgcgggggaatc
gtggatttctttccgctcgcctcttccatcgcataccgagtggaatggttcgacgatgag
atcgactcgatccggaccttcgatccgacggaccagcggtcgatcgacaagctggacgcc
tactcggtcggtccgtgccgggaattgatcgccgatgcgaggcgattcggagccgcggct
caacacgcctacgatttgatgcagaaacagctggagaaaatgagcgaccggcaagccaaa
gagcggctggagtccgaaatttcccgggaaatcgatcttttgcgacaaaacgtctatttt
tccgaaatttacaagtatgtctctttgttgtatccggagcgccagacgctgctggactac
gtgccgaaagacacgcttctcatcatggacgaaccgaaccggctgggcgaaaccgccaaa
cagctggagcgagacgaatccgagtggagcgttcacttgctgcagcaaggcaagacgcta
cccggcttcacgctcgccgtaccggctgaacaagcgatgtatccgaaacagtttcaggtc
gtctacctgtcgctgttcgtcaggcagattccgcacacccagccgcagaacatcgtcaat
ttcgtctgccgttcgatgcaaaacttccatggccagatgaacgtgctgaaagcggaaatg
gaacgttggcgcaaaagcggcgcacacatcctgatgctggccggcagcccggagagggcg
gagcgtatccgccgcgtgctcgacgactatcatatcgaggcgcccgagattctgctcggc
aaccttcagagcggattcgagcttccttccgtgaaactggtcgtcatcacggaaggcgag
atgttcacgcagaagcagcgcaaagcccgccgcgtcgaccgccatctggacaacgccgaa
cgcatcaagagctacaccgagctcaaggtcggcgattatgtcgttcaccagaatcacggg
ataggcaagtatctcggcatcggcacgatggaagtcgcgggtatccacaaagactatctt
catatcttgtacgcgggcggcgaccggctgtcggtgcccgtcgagcaattcgacctgatc
cagaaatacatcggctcggaagagaaagagccgaaagtcagcaaactcggcggacaggat
tggaaccgcgtcaagtccaaagtccgttcgtcggtcaaagatatcgcggacgatctcatc
aagctttatgccgcgcgtcaggaaacgaaaggcttcgcgttcggcgaggatacgacgtac
cagcaagaattcgaagctatgttcccttacgaggaaacgaacgaccagctgcgtacgatc
cgcgagatcaaggcggatatgcaattgccccggccgatggaccgcctgctgtgcggcgac
gtgggctatggcaagacggaggtcgccgtgcgcgcggcgttcaaggcggcgatcgaaggc
aagcaggtcgcggtgctcgtgccgacgacgattttggcgcagcagcattacgagacgttc
cgcgagcggttttccgggtatcctttcaatattaaagtcatgagccgtttccgctcccgc
aaggaacagaacgatgcgatcaaaggcttgaaagccggcaccgtcgacgtcgtgatcgga
acgcaccgtctgctctcccaagacgtcattttcaaggatttgggcttgctcatcgtcgac
gaggagcagcggttcggcgtcactcataaagagaagctcaaaaagctgaaaacgaacgtg
gacgtcctgacgctgacggcgacgccgattccgcggaccctgcacatgtcgatgctcggc
gtgcgggatttgtccgtcatcgagacgccgccggagaaccgcttccccgtgcagacgtac
gtcgtcgaatacagcccgacgctcgtgcgggaagccatcgagcgggaattggcgcgcgac
ggccaagtctattatctcttcaaccgggtgcagggcatctaccagatggcggagcagatc
agcgctctcgtgccggacgcccgcgtcgccgtcggccacgggcagatgtccgagcaggag
ctcgaacggacgatcctcgatttcctggacggcgaatacgacgtgctcgtcagcacgagc
atcatcgaaacgggcgtggacatcccgaacgtgaacacgctcatcgtgcacgatgcggac
aagatgggcttgtcccagctctaccagctgcgcggccgcgtaggccgttccagccgaatc
gcttacgcctactttacctatcagagggacaaggtcctcaccgaggtcgcggagaaacgc
ctccagtccattaaggaattcacggagctgggctccgggttcaagatcgcgatgcgcgac
ttggccattcgcggcgcgggcaacctgctcggcgcggagcagcacggttttatcgcgtcc
gtcgggttcgacctgtactcgcagatgctggccgaagagatcaatcagcgcaagagcgaa
tggggaggggcggccgttcccgtccagccggtgaacacgcagctcgatttgggcgttgac
gcatacctgcctccggactatatctacgacagcatccagaaaatcgaaatttacaaaaaa
gtcgcaggctcgaccacgctcgaggacgtatccgatctgttcgacgagctggtggaccgg
ttcggcgatccgccgaaagcggtgctcaacctgctcgccgtcgcacggctcaaggtttac
gggcggcgttacggggtggagtcgatcgtccatcgcggcgacgacgtgacgctgaaattc
gaggatcgccgcgcctccgaggtggagggtccgaagctgaaggcgctcgaggccaagttt
cagggccgcctgttggtcgttctgtcctcccagcagctatcggccaagctcaaaacccgc
ggcctcggggaagacgcactgttggcgctcgtcgaggagtttctggtacaatacagggaa
gtcctaaaatcgaagggagaacttcaagatgttgcaccctaa
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integrated database retrieval system
