Cohnella candidum: EAV92_21340
Help
Entry
EAV92_21340 CDS
T05696
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
coh
Cohnella candidum
Pathway
coh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EAV92_21340 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coh03019
]
EAV92_21340 (rnr)
03016 Transfer RNA biogenesis [BR:
coh03016
]
EAV92_21340 (rnr)
Enzymes [BR:
coh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EAV92_21340 (rnr)
Messenger RNA biogenesis [BR:
coh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EAV92_21340 (rnr)
Transfer RNA biogenesis [BR:
coh03016
]
Prokaryotic type
tRNA degradation factors
EAV92_21340 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
OB_Dis3
CSD
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
AYQ75766
UniProt:
A0A3G3K5J5
LinkDB
All DBs
Position
4609443..4612226
Genome browser
AA seq
927 aa
AA seq
DB search
MCTEQELLDFMRETAYKPMTYQELEKHFGIDNAEDFKDFLRLLTEMEQDGKILRTRTERY
GVPERMNLLRGRLQGHPKGFAFLIPDEPDHPDVYIHANDMKSAMNGDIVLVRVTGKSDNG
QRMEGEIVRIVKRAVTQVVGLFQNHETFGFVVPDDKRINKDIFIRQENFKGAVTGQKVVA
NIIRYPEGRSAAEGEIIEVLGHKDDPGVDILSIIRKHGLPEGFPDDVMAEAEAAPDSITE
DEIVRQGRRDLRNRVIVTIDGEDAKDLDDAVNVERLENGNWLLGVHIADVSYYVRENSKL
DQEAYNRGCSVYLVDRVIPMLPHRLSNGICSLNPKVDRLTMSCEMEFDPRTMKRVRHDIF
TSVIRTKERMTYTNVRKIVQDEDPEVMERYADLVDNFRLMKELALALRGSRMRRGAIDFD
FQESKVIVDEQGKPVDIVKRERSIAEQMIEEFMLAANETVAEHFHWLKVPFLYRIHEEPD
GEKLRHFMQFAGNFGYAVRGKGNSVHPRALQSLLEEIRGTKEETVISTMMLRSMKQAKYD
AESLGHFGLAAEFYSHFTSPIRRYPDLVIHRVMREVLENGGGGLPELRFDVLSGRMPDIA
QQSSERERVAVDAERDTEKLKKAEFMLDKIGEEFSGIISGVTGFGMFVELDNTVEGLIRL
SDLTDDYYHFHELQMALIGERTSKIYRIGDEVKIRVARVNMDDHTIDFEMVDMKHRSADR
ARWVDARAGGFGGGGGGRQRKKKRQGGGGFAASAQQGGPGAVGGREDRRAGESGAGKGRR
GGGRGAGGRDKRVAEAIAAAPSGGDAGSAATQGGGRRQKRGAGGGNAAAPAVERASAAPA
PAAAEKPPRGRGKKVDMWGLPVSGVGLKDDGGESEALAEMRKARRREGGGGGGGGRRKGG
GAPSGGGSDAGGGGGSRPPRRRGKPKE
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atgtgtacggaacaggagctgctcgacttcatgcgcgagacggcttataaacccatgacg
taccaggagctggagaagcattttggcatcgataatgccgaggatttcaaggactttctg
cgtttattgaccgagatggagcaggacggtaaaatcctgcgtacccgaaccgagcgctac
ggcgtgccggaaaggatgaatttgcttcggggacgtctgcaaggccatcccaaaggcttt
gccttcttgattccggacgagccggaccatccggacgtctatattcacgcgaacgacatg
aaaagcgccatgaacggcgatatcgtgctcgtgcgcgtgacgggtaagagcgacaacggc
cagcgtatggaaggcgaaatcgtgcggatcgtcaagcgcgcggtcacgcaggtcgtcggc
ctgttccagaaccatgaaacgttcgggttcgtcgtgccggacgacaagcggatcaacaag
gacattttcatccgccaggagaacttcaagggtgcggtcaccggccaaaaggtcgtggcc
aacatcatccgctatcccgaagggcggtctgccgccgaaggcgaaatcatcgaagtgctt
gggcacaaagacgacccgggcgtcgatattctgagcattatccgcaagcatggactgccg
gaaggctttcctgacgacgtcatggccgaagccgaagccgcgccggactccattacggag
gatgaaatcgtgcgccaaggccggcgcgatctgcgcaaccgcgtcattgtgacgatcgac
ggcgaagacgcgaaggacttggacgacgcggtcaacgtggaacggctcgaaaacggcaac
tggctgctgggcgtccacatcgcggacgtcagctattacgtgcgcgagaactccaagctg
gatcaagaagcctacaaccggggttgcagcgtttatttggtcgatcgggtcatcccgatg
ctgccgcaccggctgtcgaacggcatctgttcgctcaatccgaaagtggacaggctgacg
atgtcctgcgaaatggaattcgatccccgcacgatgaagcgggtccggcatgatattttc
acgagcgtgatccgtaccaaagaacggatgacctatacgaacgtgcgcaaaatcgtccag
gacgaagatccggaagtgatggagcgttacgccgacctcgtcgacaacttccggctgatg
aaggagcttgcgttggcgctgaggggcagccggatgcgccggggcgcgatcgacttcgac
ttccaggagtcgaaggtcatcgtggacgagcagggcaaaccggtcgatatcgtcaaaagg
gagcgctcgatcgcggaacagatgatcgaggagttcatgctggcggcgaacgagacggtg
gcggagcatttccattggctgaaggtgccgttcctgtaccggatccacgaggagccggac
ggggagaagctgcggcacttcatgcagttcgcgggcaacttcggctatgcggtgcgcggc
aagggtaactccgtgcatccgcgagcgttgcagtcgctgctggaggaaatccgcggcacg
aaggaagagaccgtcatcagcacgatgatgctgcggtccatgaagcaggcgaaatacgac
gccgagagcttgggacactttgggctggcggcggagttctattcgcacttcacctcgccg
atccggcgctatcctgacctcgtcatccaccgggtgatgcgagaggtgctcgagaacggc
ggaggcggcttgcccgagcttcggttcgacgtcctgtcgggccggatgccggacatcgcg
cagcagtcgtccgagcgcgaacgcgtggcggtcgacgcggagcgcgacacggagaagctg
aagaaagccgagttcatgctggataagatcggcgaggaattcagcggcatcatcagcggc
gtgaccgggttcggcatgttcgtggaactggacaacaccgttgaaggtcttatccggctg
agcgatctgacggatgactactaccatttccacgagctgcaaatggcgctgatcggggaa
cgtacgtcgaagatctatcgcatcggcgacgaagtgaaaatccgcgtggcgcgcgtgaac
atggacgaccatacgatcgatttcgagatggtcgacatgaagcaccgcagcgcggatcgg
gcgcgctgggtggatgcgcgcgccggaggtttcggcggtggcggcggaggccgccagcgc
aagaagaagcgccagggcggcggcgggttcgccgcctcggcgcagcagggcggcccgggc
gcagtgggcggccgcgaggatcgccgcgccggcgagagcggcgcgggcaagggccggcgc
ggcggcgggcgtggcgccggcgggcgcgataagcgcgtcgcggaagcgatcgcggccgcg
ccgagcggaggcgacgccgggtccgcggcgacgcagggcggcgggcgccggcagaagcgc
ggcgccggcggcggcaacgccgctgcccccgcggtcgagcgcgcgagcgccgcgcctgca
ccggcagcggctgaaaagccgccgcgcggtcggggcaagaaggtcgacatgtggggactc
cccgtgtcgggcgtgggcctgaaggacgacggcggcgagagcgaagcgctcgccgaaatg
cgcaaagccagacgccgcgaaggcggcggtggcggtggaggcggtcgccgcaaaggcggc
ggagctccatccggcggcggctcggatgccggcggtggtggcggcagcagaccgccgaga
agaagaggcaaaccgaaagaataa
DBGET
integrated database retrieval system
