Cohnella candidum: EAV92_24275
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Entry
EAV92_24275 CDS
T05696
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
coh
Cohnella candidum
Pathway
coh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EAV92_24275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coh03019
]
EAV92_24275
03400 DNA repair and recombination proteins [BR:
coh03400
]
EAV92_24275
Enzymes [BR:
coh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EAV92_24275
Messenger RNA biogenesis [BR:
coh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EAV92_24275
DNA repair and recombination proteins [BR:
coh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EAV92_24275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ZnuA
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AYQ75385
UniProt:
A0A3G3K4B9
LinkDB
All DBs
Position
5275010..5278261
Genome browser
AA seq
1083 aa
AA seq
DB search
MNSIWRELISKHLISARQTATKPVLLVFKGFTQDFYKEISIPKLLTIPITVDIVTLNNAK
AGMLPEIFTKTQGEAYWCTFEEYLVLGQEILALYFSIKQIANNIYCKTFPSPYFIPDANR
LYETYYSDNVDLNGKDDDSLHEIFQKFYGDLKRIDSVWYIVYGDDVESESFYPIPTFELQ
ERKLHVNENATLELSEEDDSLVALTNLLFQETSLPHEIVVSYTGEISAYPLQYYDRIKVL
QSLFSLSKFVLVTKVIDSVAHLDESEYLEILRKYWGHSSFRDLKMYKDVHDPEFKKETIF
IPQSKIIDDIVKQAEAAQEGTTYKDIFVTSPTGAGKSVMFQVPAIYLAEKYRLMTIVISP
LIGLMTDQVQGLVERDVAISATINSEITPVQKMEIMERIQSGEISILYISPETLLSRSDI
AQLIGTRTVGLFVIDEAHIVTTWGKAFRSDYWYLGSYLQRLRKEMQFPIATFTATAIYGG
MEDMYAETRDSLNLINPISYFGYIKRDDLEVRINRKKQTRERFSEYLEEKFKILTYRLEQ
FLAGDRKTLVYFPTIGLINQFMEYAKQYGSERLRGNITSYYGPLDKERKNANYLRFKKNE
AIIMLATKAFGMGIDIPDIENVYHFAPTGNVCDYVQEIGRAARKLDQGYAFFDFLPKDFV
HVNRLHGISTIRKQQLVQVMSKVLQLVDADKNRSNIRHLLVNAEEFRYIFQQGSNGDAGE
DIDNKLKTALLIIEKDFKAKMGYSPIIARPRSIFSREYFMVQREYEPILMKNYGEFFRKI
GDAKKEAYGNIYVCNMKGLWEGRFRNLSFPQFKFKFHTKDESLKLDFLDYLIPVLQLEVS
LKERNQESFFQELTKLLEHIGSIFGEYAKERKYFTVEDLAGKFQAAFGLDKYSSENLASI
VIHSADNYDRIMRKHSNFYNRFITFEEAKDRYSIQNSGYAGFIDWIRIDSKYLLAQSNRT
EENIHNYEMYLPKVNREKIEKTFILLGVLEALGLVLYRANGGDNPEIFMRINSRMQIARS
LQDPLKYRNYILENVHLRHKISVAMLTFLFKNEVSNPEFWEYIENYFLGKIPDEVLAEVK
SNP
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atgaactctatttggcgtgaacttatttctaagcatcttatttctgcgagacaaactgcc
acgaaaccggttcttcttgtcttcaaaggatttacacaggatttctataaagagatttca
attcccaagctgctaaccattccaattacagttgacatcgtgacactgaataatgccaaa
gcgggcatgttgcctgaaattttcacgaaaacacaaggggaagcatactggtgtacgttt
gaagaatatttagttttgggacaggagattcttgccctgtacttttcaataaagcaaata
gcaaataacatctactgtaaaacatttccgagtccctatttcatacctgatgccaatagg
ctttacgaaacctattattccgataacgttgatttaaatggaaaagacgacgattctctt
catgaaatatttcagaagttttatggcgatttgaagcgtattgattctgtctggtatatc
gtctatggcgatgacgttgaatccgaaagtttctatccaattccaaccttcgagttgcaa
gaacggaaattacatgtgaatgaaaatgcaacattagagttgtccgaagaagatgattcg
ttggtagctctcaccaacctactatttcaagaaacgagtttaccccacgaaattgttgtt
tcgtatacaggggagatttctgcctatcctcttcaatattatgatcgaataaaggttctc
cagtcccttttttccttatctaaatttgttttagttaccaaagtaattgattcagtcgct
catctggatgaatcggaatacttagaaattctcaggaagtattgggggcatagcagcttc
cgtgatttgaaaatgtacaaagacgttcacgatccggagtttaagaaagagacgatattt
attccgcaaagcaagattattgatgatattgtgaaacaggcggaggcggctcaagaggga
actacctataaggatattttcgtaacttctccaacaggtgccggaaaatccgtgatgttt
caagtgccagcaatttatctggcggaaaagtatcgattaatgactatcgtgatctcccca
ttaatcgggctcatgacggaccaagtacagggtctggtagaacgagatgtggcgatttcg
gcgacgatcaactcggagatcacgcccgttcagaagatggagatcatggagaggattcag
tctggtgaaatatctatcttgtatatttctccggagactttgttaagccgctcggatatt
gcccagctgatcggaactcgtaccgttggattgtttgtcattgacgaagctcacattgtt
acgacttgggggaaagctttccgttccgattattggtacttagggagttatttgcaacga
cttcgtaaggaaatgcaattccctattgccacgttcacggcaacggcgatatatggcgga
atggaagatatgtatgcagagacgcgggatagtctgaatttaataaatccaattagctat
ttcggttacatcaaaagagatgacctggaggtccggattaatcgaaaaaagcaaactagg
gaaaggttcagcgaatatttagaagaaaagttcaaaattctaacttaccgtcttgaacaa
tttcttgctggtgatcgcaagacattagtttattttccgactattggcttgataaatcag
ttcatggagtatgccaagcaatacggaagtgaacggttgaggggaaatatcacttcttac
tatgggccgttagacaaggaacgcaaaaatgcaaactatttaagattcaaaaaaaatgaa
gctatcatcatgctagctactaaagctttcggaatgggaattgatattccggatatcgag
aacgtctatcattttgcacccaccgggaatgtatgtgattacgtgcaagagatcggtcgt
gcagctcggaaacttgatcaaggttatgctttctttgattttctgcccaaggattttgtg
catgttaatcgtctgcatggcatttctaccatacgtaaacagcaattggttcaagttatg
agcaaagtactgcagttagtcgatgccgataaaaacagatcgaatatccgtcatttgctt
gtaaacgctgaggaattccgctatatctttcagcagggctcaaatggtgacgccggggag
gacattgataataagcttaagacggcgctcttgattattgagaaagattttaaggcgaag
atgggttactctcccattatcgctagacctcgcagtatcttttcccgggaatatttcatg
gttcaacgggaatatgaaccaattctgatgaagaattacggtgagtttttcagaaaaata
ggcgacgcaaagaaagaggcttatggcaatatctatgtctgtaatatgaagggactatgg
gaaggaagatttcgcaatttatccttcccacagttcaaatttaagtttcatactaaggat
gaaagtctaaaattagattttttggattaccttattcccgtattgcagttggaagtttcg
ctcaaagaacggaatcaagaaagtttttttcaagaattaaccaaacttttggagcatatt
ggatcaattttcggagaatatgccaaagagcgtaagtacttcaccgttgaagatctggct
ggtaaattccaagctgcgttcggcttggacaagtattcgtcggaaaatctagcatctatc
gtgatccacagcgcggacaattatgatcgcatcatgcgtaaacactccaatttttacaat
aggtttattacttttgaagaagcaaaagaccgatattcgatacagaacagtggctacgcg
ggtttcattgattggatccggatcgattcgaaatatcttcttgcacaatcgaatagaacg
gaggaaaacattcacaactacgagatgtacttacccaaggtgaatagagaaaaaatcgag
aagacgtttattttacttggtgtactcgaagcattgggacttgtcctctatcgtgcgaat
ggaggcgacaatccagaaatattcatgcgtataaactcacgaatgcagattgctcgcagt
ctccaggatcctctgaaatacaggaattatattcttgaaaatgtacatttaaggcacaag
atttcggtcgctatgctgacttttttattcaagaatgaagttagcaatcctgagttttgg
gagtatattgaaaactactttttagggaaaatccctgatgaagtcttagcggaagtgaaa
agtaatccttga
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