Cohnella sp. LGH: J4772_04880
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Entry
J4772_04880 CDS
T10185
Name
(GenBank) S-layer homology domain-containing protein
Organism
cohl Cohnella sp. LGH
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SLH
Big_5
S-l_SbsC_C
fn3
Ig_3
Peptidase_M26_N
BNR_4
FN3_DSCAM-DSCAML_C
CopC
Fn3_PBP1
Motif
Other DBs
NCBI-ProteinID:
QTH43761
LinkDB
All DBs
Position
complement(1233364..1240455)
Genome browser
AA seq
2363 aa
AA seq
DB search
MMGKRIRMMMLVFLVGCSGLSGLFASEANKAYAGRVWKDLGDSFVSNHDAIASMFAVSGI
PHVAYSDRTEGGTGPLTVKKYFYNPNGGSNGAMGWTTVGKPDGGRPDGVISDGTVSATSV
YSNNGTDIPYIAYREAVYLPGQSTPNGLSLSVKKYNDVSDLWDLVGPAGFSPNSTDNASL
DVDNSTGIPYVAYVWSENVSNKTEYRVSVRKYNAGTNQWDSLGAFLETKANSLSLKVYNG
TPYLAYIDFSASGSGITTGIPTVKKFNGTSWVSVDGKSSAGASAISSETTAGNTQMSLYN
GSLYVSYQSGSGTMKVLKYDTTVSPTTWETVGANDIIESWRMGSNLVLYVDNETGIPYVG
YMLTNSGISEPVVMKYVSDTDMWIRMGDQPLAGLGATIFALYADDYTPYVGLLTANGIRV
MSIVPVPPEATYSPATNASDVAVGTDLKLTFSEDVTAVSGKFIHIMKSLPSGDIEESKIE
ATDTTQVTVNAYSYYYDPETHTGTETSPAATIDLSADLEYGTDYFVQIDEGAFRSRDDAD
YAGIAITDKTTWKFRTEPDPNPDTTAPTAETYSPANGSATAAVDTDLTLTFSENVARGDG
SKSIVIRKSDDAVVATIPVTDSSVMVAGNRVTIHLASDWLDYDTVYYVTIDQGAFTDLSI
NQNLYAGITDNTMWSFKTAEPPLPVFTVGDGTANSPYQITNPDQLNAVRDYLDKHFIVMN
DINLNVEPYNAGAGWQPIGAYDSDPLNSKPFTGKFDGNEKTISGLTIKSNEAYLGLFGYV
SGAAIQNMKLTGVDIQPGTPTDVGGGTVGSLAGAVDNSVVTNVSAKGNIVNKDRTGGLIG
VLGRGSSVSKVSANVALPLPRNGEFDRYDLLNPPPILLSGGVAIDYDYRGGLVGLVNGTS
ESRVSIKEGRASGASDSIESIIEGGSYIGGLIGSGSYVDVERSYAQALEITGYNQGSNPV
LKFSTNVGGFAGQFVGATVKTSSAGGMVGTMITQYVKGNEAVAGFVGRSEDSTYTDDFSI
SHVDGYTIAGFMREAAGTNTIDYAYFAGKVEQGETEWYGFGPLSSVNATNAYYDNTRVPG
SDNGSGVGKSSVAMQDKDTFNGWNFSSLWSINFEVNGGYPHYGTYVAPSAPAFSPAPTAQ
PGTAAGSTSIILNSGTVPAAGNRLVVKVSPSSIATPKVGDAVPTGTGATDPYTSGNDIAG
VDDTINKYIGLYEVNGSGEIERFTQIELISSDIKPVTPPGPANAETPTISTQPQGDTVSV
GTPVTLSVDANVNDGGTLSYQWYVNTIESNSGGSPLNEATSATFAVPTNVVGSVYYYAEI
TNTNDNATVSKTATVASAVVKVEVQAGSSTPSGLIDPSKTYEWEQLGSELPGGHAGNQGM
STYFDNGVPYVALLDSVNVDGAWKRELTVYKYVNNQWEAIGNKEDLVLREKGHDNQIKLI
EYVSLVVKDGTPYVAYAPGGGEMLVKYFDEAADEWVEAAFGTETPTNGAYMNMIVGPDQA
IYVAYRESDLGGGVLRVKKYDNETWSEVGNTPLEVNGGSSPTLAFHNNQLQVIYSIMNGG
LKLATLNGANWTRIDLESKPTLFPSIVWTTQGEEIYNYITENTPVSFGHFVSGSNTALAD
TGMGGSFLYATSVVGHNNELFIPLNDGKIKKSDGTSVLSGNWSDLTNVPKFADNPMGLKN
GLHIDGNAVYIAYTEGGKLFFKKLVETGGSGGTIEAVTPTITTQPIGKTAKVGDTVTLSV
DANVSDGGTISYQWFVSDTAGTGGFGFAISGATSSTYPVPTSATGTAYYFVEVTNTNDNA
TGTKIAKVQSSKATVVVEAGVPTAPTNVTAVAGDGRATISFTPSSNDGGSPIAKYIVTSQ
PDGITAEGTGSPITITGLTNGTSYTFTVKAINSAGSSAASDASSAVVPRAPSGGNGDGSG
GGSGSGSGGTGSSGANGGKGNSNEEAVIVLVNGKEENAGTAITGKRNEQTLLTIAVDQKK
LDDKLAAEGQGAVVTIPVKSKSDVIIGELNGQMVKNMENKEAVLVLQTGHATYTIPAHEI
NIDAIFAQLGKPANLADIKVRIEISASRAEKIKLAENAAEKGTFSLVMPPLEFDITAVYG
NQTVNVTKFNAYVERTVAIPDGIDPNKITTGVVIESDGSVRHVPTQVTKNGARYFAKINS
LTNSTYAIVWNPIEFSDVGKHWAKSAVNDMGSRMVIDGTGGGKFTPNRDITRAEFAAILV
RGLGLKPENGVTAFSDVKASDWYSGVINTAYAYQLIDGFQDGTFRPKDKITREQAMLILS
KAMVLTGLADTLSVPSADAVLSPYGDASKVAKWAQSGAAGSVQAGIVTGRSADTLAPKAN
MTRAEVAAIVQRLLQKSELIEVK
NT seq
7092 nt
NT seq
+upstream
nt +downstream
nt
atgatgggtaaaagaataaggatgatgatgttagtgtttctggttgggtgtagcggacta
tcaggactattcgcatcagaggcgaacaaggcttatgcggggagagtctggaaggatctg
ggggacagtttcgtttcgaatcatgatgcaattgcatccatgtttgcggttagtggcatc
cctcatgtcgcctattcggatcgtacagagggcggcaccggtcctctcacagtcaagaag
tatttttacaacccgaatggtggtagtaatggcgcgatgggctggacgacggtaggcaaa
cccgatggcggcagacccgacggcgtaatttcggatggtacggtatccgcaacgtctgtg
tacagtaacaatggcactgacatcccttatatagcttatagagaggcagtctatctgccg
gggcagtcgacgcccaatggtctcagcctctcagtcaagaagtataatgatgtttcggac
ctgtgggatttagtgggtccagccggtttttcgccaaattcaacagacaacgcatctctg
gacgtggacaacagcaccgggatcccatatgtcgcctacgtctggagcgagaatgtaagc
aataaaaccgaatatcgagtctcggtgaggaagtacaatgctggaacgaatcagtgggat
tcgttaggtgcttttctggagacaaaagcaaattccctatcgctgaaagtgtacaacggc
accccgtatctggcctatatagacttttccgcttctggttccggaattactacgggcata
cctacagttaagaagtttaatgggacgagctgggtgtcagtggacggtaaaagttcagcc
ggcgcgagcgcgatttcgtcagagacgacagcgggtaatactcaaatgagtttgtacaat
gggagcctgtatgtatcctatcagagcggaagcggtacaatgaaggttctgaaatatgat
acaacggtttcccctacaacctgggagacagtgggagccaatgatattatagaaagctgg
cgtatgggaagcaatttggtgctgtatgtggacaacgagaccgggattccatatgtgggc
tatatgttaacgaactcgggcatcagtgaacccgtagttatgaagtatgtttctgatacg
gatatgtggataaggatgggggatcaacctctggcggggctaggcgcaaccatctttgcg
ctgtacgcagatgattataccccgtacgtagggctgttgactgccaacggtatccgtgtc
atgtctattgtacctgtgccgccggaagcgacctattctcctgcaactaatgcgtcggat
gtagcggtaggcaccgacctgaagcttacgtttagcgaggacgtaacggcggttagcggc
aagttcattcacattatgaaatcgttgccctcgggcgacatcgaggagagcaagattgag
gcgacagacaccacgcaagtaacggtgaacgcctattcctattattacgatccggagacc
catacaggcacggagaccagtccggcagcgacaatcgatctgtcagcagatttggagtac
ggcacagactacttcgtacagatcgatgagggagcatttaggagcagagacgatgccgac
tacgccggcatcgcgattacggataaaacgacgtggaaattcaggactgagccggacccg
aatccggatacgacagcaccgacggcagaaacctattctccggctaacggttcggcaaca
gccgcggtggacaccgacctgacgctgacgttcagtgagaacgtggctaggggggacgga
agcaagagcattgtaatcaggaagtcggacgatgctgtggtagcaacgattccggtgacc
gactcatctgtgatggtggcaggcaatagggtgacgatccatctggcgtccgattggttg
gattacgatacggtgtactacgtgacaattgatcagggagcgttcacggatctatcgatt
aaccaaaacctatacgcaggtattacggataatacgatgtggagctttaaaacggcggaa
cccccacttcctgtttttacagttggggatggaacggcaaatagtccgtatcagatcacg
aatccggaccaattgaatgctgtgagggattatttggacaagcactttattgtcatgaac
gatattaacttgaatgtagagccttataacgcaggcgcaggttggcagccgattggcgcc
tatgatagcgatccgctcaatagcaaaccgtttactggaaagtttgatggcaatgagaaa
acaattagcggacttacgatcaagtctaatgaagcgtatttgggattgtttgggtatgtc
agtggtgcagcaattcaaaatatgaagctgaccggagtggatattcaaccggggacgccc
actgatgtgggtggcggaacagtcggttcgttggcaggagcagtggataattctgtcgtc
acgaatgtcagcgcgaaagggaacatagtgaataaggatcgaaccggcgggctcatcggg
gtattgggcagaggctccagtgtatccaaagtatctgctaatgtggcgctgcctctgcca
cggaatggggaatttgatcgctatgatcttcttaatcctcctcccattttattatccggt
ggggttgcaatcgattatgattatcgcggagggctcgttggtcttgtcaatggcacttcc
gaatcgcgtgtgtcgattaaagaaggacgtgccagcggcgcctccgattctattgaatcg
attattgaaggcgggtcgtacatcggtggattgataggttccggaagctatgtagatgtt
gagaggtcgtatgcgcaagcgttggagataaccgggtacaaccaagggagtaatccagtg
ttgaagttctcgacgaatgtcggcggttttgccggacaatttgtcggagcaacggtcaaa
acttcatctgccggtggcatggtagggactatgataactcagtacgtcaaggggaatgaa
gctgtcgcaggttttgtaggcagatctgaagactccacgtacacggacgatttttccata
tcccatgtagatggctatacaatagctgggtttatgcgcgaagcggcgggtacgaatacg
atcgattatgcgtatttcgcaggtaaggtagagcaaggggaaaccgaatggtacggattt
ggaccactgagcagtgtcaacgcaaccaatgcttattatgacaatacacgcgtccccggt
tctgacaacgggagcggagttgggaaatcaagcgtcgcaatgcaagacaaggatactttc
aacggttggaatttcagctcgttgtggtcgattaattttgaggtgaatggcggttacccg
cattatggcacttatgtagcgccttctgcacctgcgttttctcctgctccaacagcccag
cctgggacagcggcaggttcaacgagcattatcttaaattcgggtacggttcctgctgcg
ggaaatcgtctcgtagtgaaggtatcgccaagcagtattgcgactccgaaagtcggtgat
gccgtgccgacaggaacaggggcaaccgatccttatacgagcggcaacgatattgcaggt
gtcgatgatacaattaacaaatatattggcttatatgaagttaatggtagtggcgagatc
gagaggtttacacaaattgaactcataagcagcgacattaaacctgtaacgccaccgggt
ccagccaatgcggagacgccaacgattagcacgcagccacagggtgatacagtgagtgta
ggaactccggttacactgagcgtggatgcgaatgtgaatgacggcggaacattgtcgtat
cagtggtatgtcaatacgattgaaagtaatagtggtggatctccgttaaacgaagcaaca
agcgcaacgtttgctgtaccgacgaatgtagttggatcagtttattactatgctgagatt
acgaacacgaacgacaatgctacggtcagtaaaacagcaacagtagcaagtgcggtagtt
aaagtagaagtacaagcgggttcgtctactccatccggactcatagacccatcgaaaacg
tatgagtgggagcaattgggcagcgagttaccaggcggacatgccggtaaccaaggcatg
agcacctattttgataacggtgttccgtatgttgctcttttggatagcgttaatgtagac
ggcgcctggaaacgagagttaactgtctataaatatgtaaacaatcagtgggaagcaatt
ggcaataaagaagatctcgtactaagggaaaaagggcatgacaatcaaattaaattgatt
gaatacgtgtcccttgttgtgaaggacggcacgccgtatgtagcatacgctcctggcggt
ggagaaatgcttgtgaagtactttgatgaagcagcggacgaatgggtggaagcagcgttc
ggtacagagacgcccacgaatggagcgtacatgaatatgatcgtcggtccagaccaggcg
atctacgtggcgtaccgtgagagtgaccttggtggcggcgtactacgcgtaaagaaatat
gataatgaaacgtggagcgaagtaggaaacactccgctagaagtaaacggcggatcgtcc
cccacactagcatttcacaataatcagttgcaggtaatttactccataatgaacggcgga
ttgaaattagctacactgaacggtgcaaattggacgaggatagatttagagtctaagcct
acccttttcccttctatcgtatggacgactcaaggggaggaaatctacaattatattacc
gaaaatacccccgtttcatttggtcattttgttagtggcagcaataccgcattagcggat
accggaatgggaggatcattcctatatgctacatctgtggtagggcataacaatgaactg
ttcataccattgaatgacggtaagatcaaaaaatccgacggaacgagcgtattaagcggg
aattggagcgatctaaccaacgtacctaagtttgcggacaatccgatgggattgaaaaac
ggtcttcatatcgatggcaatgcagtctatatcgcttacacagaaggcggaaaactcttc
ttcaaaaagctcgttgagacaggaggttctggcggtacaatcgaagcggtcacaccgacg
attactacacagccaatcggtaaaacggcaaaggttggcgatacggttacattaagcgta
gatgcaaatgtgagcgacggcggaacgatatcgtatcaatggttcgttagcgacacggca
ggaactggaggttttggcttcgccatctccggagcaacaagcagtacctaccccgtaccg
acgagtgcgactgggacggcctactactttgtagaagttacgaatacgaacgacaatgca
acggggacaaaaatcgccaaagtacaaagctcgaaagcgacagtagtggtagaagccggt
gttccgactgctccgacaaatgtgactgccgttgctggagacggacgggcgacgatcagt
tttactccttcgagcaatgatggcggtagcccgattgcgaaatacatcgtaacctcgcag
ccagacgggattacggctgaaggaacgggcagcccgattacgattacagggttgacgaac
ggtacgagctatacgtttacggtgaaagcgatcaactcagcgggcagcagcgcagcttca
gatgcatcttcggcggtcgttccgcgcgcgccttccggcggcaacggagatggttctgga
ggcggctcgggtagtggctcagggggcacgggaagcagtggagctaacggaggaaagggc
aactcgaatgaagaagccgttattgtattggtgaacggaaaggaagaaaacgcaggaacg
gcgataaccggcaagcgcaatgagcaaaccctgctgacaattgccgtagaccagaagaag
ctggacgataaactggccgccgaaggccaaggagcggtcgtgacgattccggtcaaatcg
aagtcggatgtgatcatcggcgagttgaacggccaaatggtcaaaaacatggagaacaag
gaagcggttctcgttctccaaaccggccatgcgacctatacaattccggcccatgagatc
aatattgacgcgatcttcgcacagctgggcaagccggctaatctggcggacatcaaagta
cggattgaaatctccgcctctcgggcagagaagatcaagctcgcggagaacgccgctgag
aaaggtacgttctcgcttgtgatgccaccgcttgagttcgatattacagcggtttacggc
aaccaaacggttaacgtgacgaagtttaatgcctacgtcgaaagaacggtcgctattccg
gacggaattgatccgaacaagattacgacaggcgtcgtgatcgagtcggacggttcggtg
cgtcatgtgcccacacaggtgactaagaacggcgcgagatattttgccaagatcaacagc
ttgaccaatagcacgtacgccatcgtctggaatccgattgaattcagcgacgtcgggaaa
cattgggccaaatccgcagttaatgacatgggctcgcggatggtcatcgatggaaccgga
ggcggcaagttcacgccgaatcgggacattactcgtgccgagttcgcagcgattctcgta
cgaggattgggacttaagccggaaaacggcgtgacagccttctccgatgtgaaagcatcg
gattggtatagcggtgtaatcaacacagcttatgcgtatcaactgatcgatggcttccag
gacggcaccttccgtccgaaagacaaaatcacacgcgagcaagccatgctgattttgtcc
aaggcgatggtgcttaccgggctggcggatacactgtccgttccatcggcagacgcggtg
ctgagtccttacggggatgcgtctaaagtggccaagtgggcgcaaagcggcgctgcgggc
agcgtgcaagccggcatcgtaacgggcagaagcgcagatacgctggcgccgaaggcgaac
atgacccgtgcggaagttgcggcgatcgtccagcggctgctgcaaaagtcggagctgatt
gaagtgaagtaa
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