Cohnella sp. LGH: J4772_06165
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Entry
J4772_06165 CDS
T10185
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cohl Cohnella sp. LGH
Pathway
cohl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cohl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4772_06165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cohl03019
]
J4772_06165
03009 Ribosome biogenesis [BR:
cohl03009
]
J4772_06165
Enzymes [BR:
cohl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J4772_06165
Messenger RNA biogenesis [BR:
cohl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J4772_06165
Ribosome biogenesis [BR:
cohl03009
]
Prokaryotic type
rRNA helicases
J4772_06165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DeaD_dimer
CMS1
AAA_19
NAT10_TcmA_helicase
AAA_30
ANF_receptor
MukF_M
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QTH43990
LinkDB
All DBs
Position
complement(1555490..1557136)
Genome browser
AA seq
548 aa
AA seq
DB search
MSTFAEFGLEPDVLQAISEMGFEEATPIQAKAIPVAIAGKDMIGQAQTGTGKTAAFGIPM
ISKIAASEDRIVALIMAPTRELAIQVSEEIEKLGRFKGLRSLAIYGGQDISRQIRSLRRK
PQIIIGTPGRLLDHINRKTIKLDDVQTVVLDEADEMLDMGFMEDIQSILKLVPEARQTLL
FSATMPANIQKLAQQFLREPEHVKVESKLLSAPSIQQFYVEIQERMKFDGLCRLLDMEPP
ELAIIFGRTKRRVAELSEALMKRGYACDGLHGDLSQNQRDAVMRKFRDGSIDILVATDVA
ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTSWSFVTHRETDHLHFIEKVTR
HRISKKMLPTLSEAMEGKQKVLAERIMETVRSDEEVNPYKWVAMQLLEQYDSVELLAAAM
KLLNGDKKDVNIELTPEDPVRSKKRKFEGGRSGGYGSSGGSGRRYGGSGGQGGGSGSWRQ
SGQGRGDRGPGGYNGGRKPYGSGNRYGGSGGGNGNRDEGGYRDNRGGRPERKDDYRGNRS
QNEDFVKV
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
ttgagcacatttgcagagtttggtttggagccggatgtacttcaagccatatcggagatg
ggatttgaagaggcgaccccaatccaagcgaaagctattcccgttgccatcgcaggcaaa
gacatgatcgggcaggcccagacgggcacaggcaaaacagccgcattcgggatcccgatg
atcagcaagattgcagcatcggaagaccgcattgtcgctttgattatggcgccgactcgc
gaactcgcgattcaggtatcggaagaaattgagaagcttggacgtttcaagggactgcgt
tccttggctatatatggcggtcaagacatctcacgtcagatccggtctctaagacggaag
ccgcagattattatcggaactcccggtcgtttgctcgaccacatcaaccgcaagacgatc
aagctcgacgacgtgcagacggtcgttctggacgaagcggacgaaatgctggatatgggc
tttatggaagacattcagtcgatcctgaagctcgttcccgaagcgcgtcagacgctgctg
ttctcggcgacgatgccggcgaacatccagaagctggctcagcaattcctgcgcgagcct
gagcacgtcaaagtcgaatcgaagctgctcagcgcaccttcgatccaacagttttatgta
gaaatccaggagcgcatgaagttcgacggactgtgccgcctgctcgacatggagccgcct
gaactggcgattatcttcggtcgtacgaagcgccgcgtagccgagctgtccgaagcgctg
atgaagcgcggatacgcttgcgacggcctgcacggagatttgtctcagaatcagcgtgac
gccgttatgcgcaagttccgcgacggcagcatcgatattctggtggctacggacgtagct
gcgcgcggactggacgtatctggcgttacccacgtcatcaacttcgacctgccgcaagat
cctgagagctacgttcaccggatcggccgtacgggtcgcgcaggcaaagagggaacatcc
tggtccttcgtcacgcaccgcgagaccgatcatcttcacttcattgagaaggtgacccgt
caccgtatctccaagaagatgttgccgaccctgtccgaagcgatggaaggcaaacagaaa
gttcttgccgagcggattatggaaaccgttcgttccgatgaggaagtcaatccttacaaa
tgggttgcgatgcaattgctggagcaatacgattccgtcgaattgctggctgctgctatg
aagctgctcaacggcgacaagaaagacgttaatatcgaattgacccccgaagatccggtt
cgctcgaagaagcgcaagttcgagggcggacgcagcggcggctacggcagcagcggtggc
agcggtcgtcgctacggcggcagcggcggtcaaggcggcggctcgggctcgtggcgccag
agcggtcaaggacgcggagatcgcggccctggcggctacaacggcggacgcaaaccgtac
ggcagcggcaatcgttacggtggcagtggcggtggcaatggcaaccgggacgaaggcggc
tatcgcgacaatcgcggcggacgtccggagcggaaagacgactaccgcggcaatcgctcg
cagaacgaagatttcgtaaaggtctaa
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