Cohnella sp. LGH: J4772_16360
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Entry
J4772_16360 CDS
T10185
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cohl Cohnella sp. LGH
Pathway
cohl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cohl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4772_16360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cohl03019
]
J4772_16360
03016 Transfer RNA biogenesis [BR:
cohl03016
]
J4772_16360
Enzymes [BR:
cohl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
J4772_16360
Messenger RNA biogenesis [BR:
cohl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
J4772_16360
Transfer RNA biogenesis [BR:
cohl03016
]
Prokaryotic type
tRNA degradation factors
J4772_16360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
SPATA25
KH-I_KHDC4-BBP
S1_2
Motif
Other DBs
NCBI-ProteinID:
QTH45856
LinkDB
All DBs
Position
complement(3827129..3829228)
Genome browser
AA seq
699 aa
AA seq
DB search
MEQSVDMQLGGRPFSLETGRLAKQANGAVVVRYGETVVLSTVTASSEPKDLDFFPLTVNY
EERLYAVGKIPGGFIKREGRPSEKAILASRLTDRPIRPLFPEGFRNDIQIVNLVLSVDQD
CSPEIAAMIGTSAALSISNVPFSGPVGGVIVGRINGEFIVNPTQEQEVISDLYVVVAGTR
DAIMMVEAEANEVSETDMLEAIMFGHDEIKKIVDTIDRLVEVAGQPKMEVKLHSVDADVE
AAVKSYAQDRLVEAVRIAEKHARQEAIDAINAETVEHFTGVYAEAPEKLGDVKEVLYDIV
KNEVRRLITHDKVRPDGRGLSEIRPISSDTAILPRTHGSGLFTRGQTQALSVCTLGPLGE
VQILDGISPQESKRFMHHYNFPPFSVGEARPLRPPGRREIGHGALGERALLKVLPSEVEF
PYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGVAMGLIKDGDHTSILTDI
QGMEDHLGDMDFKVAGTSAGITAIQMDIKIDGIDRSILTEALDQAKEGRMFILGKMLETI
TEPRKELSKYAPKILSLKINPDKIRDVIGSGGKIINKIIEDTGVKIDIEQDGTVYIASTD
EAANQRARAIIEGIVREVVVGEVYTGTVKRIEKFGCFVEILPNKDGLIHISQLANERVAK
VEDVVNIGDQIEVKVTEIDNMGRINLSRKALLNSEQVSV
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
ttggaacaaagcgtggatatgcagcttggcggccgcccgttttctttggaaaccggacga
ttggccaaacaggccaatggcgccgtcgttgtacgttatggtgaaacggtagtactctct
accgtgacggcttccagcgagccgaaggatctggatttcttcccgttgaccgtgaactat
gaagagcggttgtacgcggtaggcaaaattcctggaggattcattaaacgggaaggaaga
ccgagcgaaaaggcgatattggccagccgtttaacggaccgcccgattcgtccgttgttc
ccggaaggcttccggaatgacattcagatcgttaacctggtgctcagcgtggatcaggat
tgctctccggaaatcgcggcgatgatcggaacctccgcagcgctgtcgatctccaacgtg
ccgtttagcggacccgtcggaggcgttatcgtcggaagaatcaacggcgaatttatcgta
aacccaacgcaggagcaggaagtgatcagcgatttgtacgtcgtcgtagcgggtacccgc
gatgcgatcatgatggttgaagcggaagcgaacgaagtttccgagacggacatgctggaa
gcgatcatgttcggccatgatgagatcaagaagatcgttgatacgatcgatcgtctcgta
gaggtcgccggccagccgaagatggaagtgaagctgcacagcgtggacgccgatgtcgaa
gccgcagtcaaatcgtacgcgcaggatcgactggtcgaagctgtacgaattgccgagaaa
catgcgcgccaggaagcgattgacgcgatcaacgccgaaacggtcgagcatttcaccgga
gtgtatgccgaagcgccggagaagctgggcgacgttaaagaagtgctgtacgacatcgtc
aagaacgaagttcgtcgtttgattacgcacgacaaggtgcgtccggacggccgcggacta
tcggagattcgtccgatttcctcggataccgcgattctgccgcggactcacggatctggc
ttgttcacgcgcggacagacgcaggcgcttagcgtatgtacgctcggaccgcttggagaa
gttcagattctcgacggcatcagtccgcaggaatcgaagcggttcatgcatcactataac
ttcccgccgttctcggtcggggaagctcgcccgcttcgtccgccaggacgccgcgaaatc
ggtcacggcgcattaggcgaacgcgcgctgcttaaagtgcttccttcggaagtggaattc
ccgtacacgattcgccttgtgtcggaagtattggagtcgaacggctctacgtctcaggcg
agcatttgtgcaagcacgctggcgatgatggatgcgggcgtaccgatcaaagcgccggta
gcaggcgtcgcgatgggcttgatcaaggacggcgaccatacgtcgattctgaccgatatt
caagggatggaagaccatctcggcgatatggactttaaggttgcaggcacatctgccggt
attacggcgattcagatggacatcaaaatcgacggcatcgaccgctccattttgacggaa
gctctggatcaagccaaagagggtcggatgttcattctcggcaaaatgcttgagacgatc
accgagccacgcaaagagctgagcaaatacgctccgaaaattttgtcgctcaagatcaac
ccggacaaaattcgcgacgttatcggttccggcggcaagatcatcaacaaaattatcgaa
gataccggcgtcaaaatcgatatcgagcaagacggcaccgtgtacatcgcttcgacggac
gaagcggcgaaccaacgcgcccgcgcgattatcgagggcatcgttcgggaagtcgtcgtt
ggcgaagtgtataccggaacggtcaagcgtatcgagaagttcggctgcttcgtggaaatt
ttgccgaacaaggacgggctgatccacattagccagttggcgaacgagcgcgtggctaaa
gtcgaagacgtcgtcaacatcggcgatcagattgaagtcaaggtgaccgagatcgacaat
atgggccgaatcaatctgtcgcgcaaagcgctgttgaattccgaacaagtgtcggtgtaa
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