Cohnella sp. LGH: J4772_16670
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Entry
J4772_16670 CDS
T10185
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cohl Cohnella sp. LGH
Brite
KEGG Orthology (KO) [BR:
cohl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cohl03032
]
J4772_16670 (topA)
03400 DNA repair and recombination proteins [BR:
cohl03400
]
J4772_16670 (topA)
Enzymes [BR:
cohl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
J4772_16670 (topA)
DNA replication proteins [BR:
cohl03032
]
Prokaryotic type
DNA Topoisomerases
J4772_16670 (topA)
DNA repair and recombination proteins [BR:
cohl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
J4772_16670 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Auto_anti-p27
Toprim_3
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
QTH45914
LinkDB
All DBs
Position
complement(3888844..3890940)
Genome browser
AA seq
698 aa
AA seq
DB search
MADSLVIVESPAKAKTIGKYLGSKFIVKASMGHIRDLPKSQIGVEVENGFQPKYITIRGK
GNVLKELRDASKKVKKVYLAADPDREGEAIAWHLAHYLELDEKEDCRVVFNEITKQAVKD
AFKSPRPIDMDLVNAQQARRVLDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKLINDREN
EINAFVPEEYWSITAHLTQGKAAFEAKFHSVHGEKKELHSEAEVKEVLAQLTGAQFTVGE
VKEKERQRNPSPPFITSSLQQEAARKLNFRASKTMQIAQQLYEGVDLGKEGTVGLITYMR
TDSTRISPVAQEEAREYIEGKYGNPFLPETPRVYTKKNASAQDAHEAIRPTSVLRDPESV
KAFTSKDQFRLYKLVWERFVSSQMSSAVLDTMTVDLQNGPAVFRANGSKLKFPGFMKVYV
EGNDDGTTDEDRLLPPLAVGDKAESKDIEPKQHFTQPPPRFTEARLVRALEELGIGRPST
YAPTLETIQKRNYVALEEKKFTPTELGELVIQLMEEFFPEILDVEFTANMEGDLDHVEEG
MQDWVNVIGEFYKSFEQRLAVAEEEMKEIEIKDEPSDEVCDKCGSPMVYKMGRFGKFLAC
SGFPNCRNTKPIIKDTGVTCPKCKEGQIVERRSKKGRVFYGCNLYPGCDYVSWDKPVAKP
CPSCGGVMVEKRVKGETQLNCTVCSHSEAAEEAEEAAE
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
gtggcggactcgctagtgattgtggaatcgccggctaaggcgaagacgatcggcaaatat
ttaggaagcaaatttatcgtcaaagcgtccatggggcacattcgcgatttgccgaaaagc
cagatcggcgtcgaggtggaaaacggctttcagccgaagtacatcacgatccggggcaaa
ggcaacgttttgaaggaattgcgcgatgccagcaaaaaggtgaaaaaagtttatctcgca
gctgaccccgatagggaaggcgaagcgatcgcgtggcatttggcccattatctggagctg
gacgagaaggaagattgccgcgtcgtttttaacgagattacgaagcaagcggtcaaggac
gctttcaagtcgcccagaccgatcgatatggatttggtgaacgcccagcaggcgagaagg
gtgctcgaccggctcgtcggatacaaaatcagcccgctgctgtggaaaaaggtcaagaaa
ggactcagcgccggccgcgtgcaatcggtcgccgttaagctgatcaacgaccgcgagaac
gagatcaatgcattcgttccggaagaatattggagcattaccgctcatttgacgcagggc
aaagcggcgttcgaggcgaagttccattccgttcatggcgagaagaaggagctgcacagc
gaagctgaggttaaggaagtgctggcacagctaaccggagcgcagttcactgtcggagag
gtcaaggagaaggagcgccagcgcaacccgtctccgccgtttattacgagttcgctgcag
caggaagccgcgcgtaagctgaacttccgcgcttcgaagacgatgcagatcgcgcagcag
ctttacgagggcgtcgatctgggcaaggaagggacggtcggtctcattacgtatatgcgt
accgactcgactcgtatctcgccggttgcgcaggaggaagccagagagtatatcgagggc
aagtacggcaatccatttttgcctgaaactcctcgggtttacacgaagaagaacgcttcc
gcgcaggacgcgcacgaagcgattcgtccgacgtcggtgctgcgcgatccggaatcggtc
aaggctttcacgtccaaggatcagttcagactgtataagctggtctgggagcgcttcgtc
tccagccagatgtcgtcggccgtgctcgatacgatgaccgtcgatctgcagaatgggccg
gctgtgtttcgggccaacggttcgaagctgaaattccccggctttatgaaggtgtacgtc
gaaggcaacgacgacggcacgacggatgaggatcggctgctgcccccgctcgctgtggga
gacaaggcggaatcgaaggacatcgagccgaagcagcactttactcagccgccgccgcgc
ttcacggaagcccgactcgtgcgggcgctcgaggagttgggcataggccgcccaagcacg
tacgctccgacgttggagacgatccaaaagcgcaattatgtcgccttggaagagaagaag
tttactccgaccgaactgggcgagctcgtcatccaattaatggaggagttttttccagaa
atcctcgacgtcgaatttaccgccaacatggaaggcgatcttgaccatgtcgaggaaggc
atgcaagattgggtcaacgtcattggcgagttttacaagtcgttcgagcagcggctggcg
gtcgccgaagaggaaatgaaggaaatcgagatcaaggatgagccgtcggacgaagtgtgc
gacaagtgcggcagcccgatggtctataaaatgggacgcttcggcaagtttctggcttgc
tcgggtttcccgaattgtcggaatacgaagccgattattaaagataccggcgtaacgtgc
ccgaagtgcaaagaaggtcagatcgtcgaaaggcgcagcaagaaggggcgcgtattctac
gggtgcaatctgtatcccggctgcgattacgtctcttgggataagccggttgccaagccg
tgcccgagctgcggcggggtaatggtcgagaagcgggtcaaaggcgagactcaactgaat
tgtacggtatgcagccattcggaagctgccgaagaagccgaggaagcggcggaataa
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