Cohnella sp. LGH: J4772_22305
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Entry
J4772_22305 CDS
T10185
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
cohl Cohnella sp. LGH
Brite
KEGG Orthology (KO) [BR:
cohl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cohl03019
]
J4772_22305 (hrpB)
Enzymes [BR:
cohl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
J4772_22305 (hrpB)
Messenger RNA biogenesis [BR:
cohl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
J4772_22305 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
Flavi_DEAD
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QTH40316
LinkDB
All DBs
Position
complement(5168705..5171392)
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AA seq
895 aa
AA seq
DB search
MKFRLAIERKGITGVIFNSPLPIDSVLPDVKQALSIGGNAVLIAAPGAGKTTRVPLALLE
ESWLEGRKIVMLEPRRLAARSSAAFMARELGEQVGETVGYRVKMDTKVGARTRIEVVTEG
VLTRMLQADPALEGVGLVIFDEFHERSLQADLGLALTLEAQALLRDDLKLLVMSATLEAE
PVADLLGGAPIVRSEGRSFPVETVYRPRFAGSELEEAVAGLALEALRAHEGDVLVFLPGI
GEIRAAEAKLREKLRGYAYDVRVFALHGGLSAEEQDKALAPLPAAERKIVLATSVAETSL
TVEGVTVVIDTGLMRVSRFSPRTGMARLETVTVSAASADQRRGRAGRLRPGVCYRLWSAE
QQSALSPRSAPEIMEADLASLLLELAVWGVGEPNELAWLDAPPAPAVQQARELLVQLGAL
DKGGRQPTGHGRRMAELGKHPRVAHMLLRAKQLGLGGLACDMAVVLGERDILRYSGGQAP
TADLTARIDALRGRGPYAADDGARRRLSEEARRLRSELGVDASEGTRAERGDARSEQGEM
QAERVGERSEQVDVRTERGDALGGRYPYASDDGIRSDDCGLLLAFAYPDRIGRQRDSGKY
LLSGGRGATFGPGQALAREPWIVVADVDDAGADSRIRLAASVSLERLAQHAPEMIAVEAE
VYWDGEAKSVRGRERRKLGAIVLEEKPLGKLPEELRLKALLAGVHAEGLELLPWTKTARQ
FQQRAEFARRHDGTWPDLSDEALLATLDDWLPDYAEGMKSRSDLHKLNMKELLESLLPWD
RRRRLDEDAPTHWTVPSGSRIPIDYGDPDAPFVAVRLQELFGLPETPRIAGGRVPLTLHL
LSPAQRPVQVTRDLASFWRDGYFEVRKDLRGRYPKHYWPDNPLEAEATRRVRPSR
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcaggctcgcgattgagcggaagggaattaccggcgtgatattcaattcgcct
ttacctatagactcggttctgccggatgtgaaacaggcgctgtccatcggcggcaacgcg
gttctgatcgccgctcccggggcgggcaagacaacccgcgtgccgcttgccctgctggag
gaaagctggctggaaggccgcaaaatcgtcatgctcgagccgcgcagactggctgcgcgc
agctcggcggcgttcatggcccgcgagctgggagagcaggtgggagagacggtcggctac
cgcgtgaagatggatacgaaagtcggcgcccgcactcgcatcgaggttgtgacggaaggc
gtgttaactcgtatgctgcaggccgatcccgctctggaaggggtcggtcttgttatcttt
gacgagttccatgaacggagcctgcaggcggatttggggctcgcgcttactttggaggct
caggcgctgctgcgggacgatctcaagctgctcgtcatgagcgcgacgctggaagcggag
ccggtggccgacctgctcggaggagcgccgatcgtgcgcagcgagggacggagcttcccg
gtggagacggtatatcggccgcggtttgcaggaagcgaactggaggaagcggtagccggg
ctcgcgctggaggcgctgagggctcatgagggagacgtgcttgtgtttttgccgggaatc
ggagaaattcgggcggcggaagcgaagctgagagagaagttgcgagggtatgcctacgat
gtacgcgtcttcgcgctgcacggaggcttatctgcggaggagcaggacaaggcgctggct
ccgcttccggcagcggagcggaaaatcgtattggcgacatcggtagcggaaactagcttg
acagtggaaggcgttacggttgtcatcgacaccggcctgatgcgcgtttcccggttttcg
ccgcgaacgggcatggcgaggcttgaaaccgttacagtgtctgccgcttcggcggatcag
cgccgcgggcgcgcgggtcggctgcggccgggcgtatgctatcggctctggagcgcggag
cagcaatcggcgctgtctccgcgcagtgcgccggaaattatggaggccgatctggcttcg
ctgctgctggagctggccgtatggggcgtcggcgagccgaacgagctcgcctggcttgat
gcgccgcctgcgcccgccgtgcagcaggcgcgcgagctgcttgtgcagcttggcgcattg
gataagggtggccgccaaccgactgggcacggtcgccggatggccgaactgggcaagcat
ccgcgtgtcgcccatatgctgctgcgcgcgaaacagcttggccttggcggcttggcttgc
gatatggcggttgtgctcggggagcgggacattttgcggtattccggcgggcaggcgccg
actgcggatttgacggcgcgaatcgacgcgctgcgcggccgcggtccctatgcggcagac
gacggcgcccgcagaaggctcagcgaggaagcgcggcggctgcggagtgaactgggcgtc
gacgcttcggagggaacgcgggctgagcgtggcgatgcgcgttcggagcagggcgaaatg
caggcagagcgtgtcggtgagcggtcggagcaggtcgatgtgcggacagagcgtggcgat
gcgcttggtggtcgttatccctatgcgtcagacgacggcattcggagcgacgattgcggc
ctgctgctggcgttcgcttatccggaccggatcggacggcagcgggacagcggcaaatat
ttgctcagcggcggccggggcgcgacgtttgggccgggccaggcgctggcccgcgagccg
tggatcgttgtcgccgacgtcgacgacgccggggcggacagccggattcgtctggccgca
tccgtgtcgttggagcggctggctcagcatgcgccagagatgattgccgtggaggcggag
gtgtactgggacggcgaagccaagtcggtgcgcggccgcgagcggaggaagctgggcgcg
atcgtgctggaggagaagccgctaggcaagctgccggaggagcttcggctgaaagcgctg
ctggcgggtgtgcacgcggaagggctggagctgctgccgtggacgaagacggctcgccaa
ttccagcagcgggcggagttcgctcgccgccacgacgggacatggccggatttgtccgac
gaagcgctgctggcgacgctggacgactggctcccggattatgccgaagggatgaagagt
cgctccgacctgcataagctgaacatgaaggagctgctggagtcgctgctgccgtgggat
cggcgtaggaggctggatgaagacgctcctacccattggaccgtgccgagcggctcgcgc
atcccgatcgactatggcgacccggacgcacctttcgtcgcggtgcgactgcaggagctg
ttcggcctgccggagacgccccgcatcgcgggcggccgtgtgccgctgacgctccatctg
ctctcgccggcacagcgtccggttcaggtgacgcgcgatctggccagcttctggcgcgac
ggctatttcgaggtgcgcaaggacttgagaggccgttacccgaagcactattggccggac
aacccccttgaagcggaggcgacccggcgcgttcggccgtctcggtaa
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