Cohnella sp. LGH: J4772_24205
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Entry
J4772_24205 CDS
T10185
Name
(GenBank) PD40 domain-containing protein
KO
K01730
oligogalacturonide lyase [EC:
4.2.2.6
]
Organism
cohl Cohnella sp. LGH
Pathway
cohl00040
Pentose and glucuronate interconversions
cohl01100
Metabolic pathways
cohl01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
cohl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
J4772_24205
Enzymes [BR:
cohl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.6 oligogalacturonide lyase
J4772_24205
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase22
PD40
Tricorn_2nd
Str_synth
Motif
Other DBs
NCBI-ProteinID:
QTH40661
LinkDB
All DBs
Position
complement(5728668..5729774)
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AA seq
368 aa
AA seq
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MLEIREVTDLETGLVYTGFGRKGSNTVHSYFTVMSWRADSRFILIGADVDPATMAGKIME
IDSATGSARVIQEDMLCYNGLVSANDVFCYSTGAELMALDLRTGVRQLIAKQPKGCPFLE
PLSITNEGKRLGVYWEEAGRYAIGTVDTATGEVQTVICPDFAKPYTIANHAMINPVYPEQ
LFYAHEGNTEHIVDRIWSVATETGEACNLYEQRRLPGGENGEYVGHEMWSYDGEWLYFVK
YSHSPTAPVGICRVSRDGRSVEFINGEHRYWHACPSPDGRYVVADTLLDEGEGSEIVLVD
LATRKSRLLCRVNRWNRHPGHPHPSFSPDSRKIVFTFADEHRDLRVGIMELAPSHREEQH
AYDPGCRR
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgctggaaatacgcgaagtaacggacttggaaacgggacttgtctataccgggtttgga
cggaagggcagcaacacggttcattcctattttaccgtgatgtcctggcgtgcagatagc
cgctttatcctgatcggagcggatgtggatcctgcgactatggccggtaagataatggaa
atcgattccgcgaccggctctgcaagagtgatccaggaagacatgctatgctataacgga
ttagtgtcggctaacgacgttttctgctacagtacaggtgcagagcttatggcgctggat
ttgaggacgggtgtgcgacagcttatcgcgaagcaaccgaaggggtgcccctttcttgag
ccgctatcgattacgaacgagggtaaacgcctcggggtttattgggaagaagcggggagg
tatgcgatcggtacggtagatacggcgacgggggaggttcaaaccgttatatgcccggat
tttgcaaagccttatactatcgctaatcatgcgatgattaaccctgtttatccggagcag
ctgttttatgcccacgagggcaataccgagcacattgtcgaccgtatttggtctgttgct
acagagaccggcgaagcttgcaatctctatgagcagcggaggctgcctggaggagagaac
ggcgaatatgtcggacatgagatgtggtcctatgacggcgagtggctttattttgtgaaa
tattcgcatagcccaacggcgcccgtaggcatttgccgcgtaagtcgcgacggccgttcg
gttgaattcattaacggggaacatcgctattggcatgcttgtccgagcccggacggtcgt
tacgtggtcgcggatacgctgcttgatgagggggagggcagcgagattgtgcttgtcgat
cttgcaacgcgcaagtcgcggctgctctgccgcgtcaaccgctggaaccgccatccgggc
catccgcatccgtccttcagtcccgacagtcgtaaaatcgtctttaccttcgcagatgaa
caccgtgatttacgtgtcggaattatggagctagctccatcacatagggaggaacagcat
gcatacgatcctggttgtagacgatga
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