Cohnella sp. LGH: J4772_31085
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Entry
J4772_31085 CDS
T10185
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cohl Cohnella sp. LGH
Brite
KEGG Orthology (KO) [BR:
cohl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cohl03016
]
J4772_31085
Enzymes [BR:
cohl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
J4772_31085
Transfer RNA biogenesis [BR:
cohl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
J4772_31085
Prokaryotic type
tRNA splicing ligases
J4772_31085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QTH41913
LinkDB
All DBs
Position
complement(7539976..7541202)
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AA seq
408 aa
AA seq
DB search
MTYQTIDGVRVWGNPDAGALSQAKTCAEHGNVVQVLLMADHHKGYSQPIGGVVAYEGQIS
PSGVGYDIACGNKAVRTNVLAADIKPILPAVMDQIARKISFGVGRVNSEKVDHDLFDDPD
WSVYSAIGKQEHDKLKALARDQLGTVGSGNHYVDLFEEPETGLLWIGNHFGSRGFGHKTA
SGFLNLAAGRDFLANAPGEKMDQPPVLLDLDSELGDLYYRAMKLAGRYAYAGRDYVIAQV
LSLLSASADFEVHNHHNYAWKETHVGKTTMVVRKGATPSAPGQLGFIGGSMGDISVIVRG
KDTDENRDSFYSTVHGAGRIMSRTQAAGKMNWKTRSRSGGQITPEQMKQAVLAFGVELRG
AGTDESPFVYRKLQEVLDAHAGTIEVLHVLKPIGVCMAGADEFDPYKD
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgacttaccagacaattgacggcgtgcgcgtatggggcaaccccgatgccggcgcgctg
tcccaagcgaaaacctgcgcggagcacggcaacgtcgtgcaagtgctgctaatggccgat
caccacaaaggctacagccagccgatcggcggcgttgtcgcttacgaggggcaaatttcg
ccctccggcgtcggctatgacattgcttgcggcaacaaagcagtgcggacgaacgtgctg
gcggcggacattaaaccgatactacccgccgtgatggatcagatcgccagaaaaatatct
ttcggcgttgggcgcgttaacagcgaaaaggtggatcacgacctgttcgacgatcccgac
tggagtgtgtattcggcgatcggaaagcaggagcatgacaagctgaaggcgctggcccgc
gatcagctcggaacggtcggcagcggaaaccactatgtggatctgttcgaagaaccggag
acgggtcttctctggatcggcaaccattttggaagtcgcggtttcggccataagacggcg
agcggatttctcaatctggccgccggacgggacttcctagcgaatgcgccgggagagaag
atggaccagccgcccgtgctgctcgatctggacagcgagctcggcgatctgtactaccgg
gcgatgaagctggccggtcgatatgcatacgcgggccgcgattacgttatcgcacaggtg
ctgtcgctcttgagcgcaagcgccgatttcgaagtgcataaccaccacaactacgcttgg
aaggaaacccatgtcggcaaaacgacaatggtcgtccgcaaaggcgcgactccgtccgct
ccgggacagctcggttttatcggcggcagcatgggggacatctctgtaatcgtaagaggg
aaggatacggacgagaatcgcgattccttttacagcaccgtgcacggagcaggtcggatt
atgagtcgtacgcaggcggccggcaaaatgaactggaaaactcgcagccgttcaggcggg
cagatcacacctgagcaaatgaagcaagccgttctggccttcggagtggagctgcgcgga
gccggtacggacgaaagcccgttcgtctatcgaaagctgcaggaggtgctggacgctcat
gccggtacaatcgaggttctgcatgtgttgaagccaatcggcgtctgcatggccggcgcg
gacgagttcgatccgtataaggactga
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