Cohnella sp. LGH: J4772_31940
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Entry
J4772_31940 CDS
T10185
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cohl Cohnella sp. LGH
Pathway
cohl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cohl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4772_31940 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cohl03019
]
J4772_31940 (rnr)
03016 Transfer RNA biogenesis [BR:
cohl03016
]
J4772_31940 (rnr)
Enzymes [BR:
cohl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
J4772_31940 (rnr)
Messenger RNA biogenesis [BR:
cohl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
J4772_31940 (rnr)
Transfer RNA biogenesis [BR:
cohl03016
]
Prokaryotic type
tRNA degradation factors
J4772_31940 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
CSD
OB_Dis3
TFA2_Winged_2
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
QTH46850
LinkDB
All DBs
Position
complement(7781297..7784233)
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AA seq
978 aa
AA seq
DB search
MCTEQELLDFMRETAYKPLTYKELEKHFGIEDAVEFKQFLRLLTELEQEGKVLLTRSNRY
GVPERMNLLRGRIQSNPKGFAFLIPEDREHPDLYIHANDMKGTMNGDIVLARVSAKNENG
RFEGEIVRIVKRAVTQVVGLFHNHESFGFVEPDDKRITKDIFIRAENFKGAVTGQKVVAN
IITYPEGRTAAEGEIIEILGHKDDPGVDILSIIRKHGLPEGFPDDVLAEAEAAPDAISEE
EIVQQGRRDLRNKVIVTIDGEDAKDLDDAVNVERLPNGNLLLGVHIADVSYYVREKSKLD
EEAYNRGCSVYLVDRVIPMLPHRLSNGICSLNPKVDRLTMSCEMEFEPDTMKRVRYDLFT
SVIRTTERMTYTNVRKIVNEEDPEVAERYSELVDTFKLMKEMALGLRSMRMRRGAIDFDF
QESKVIVDEQGKPVDIVKRERSIAEQIIEEFMLAANETVAEHFHWLKVPFVYRIHEEPTN
EKLLTFMQFASNFGYAVRGKGNTVHPRALQTLLEEIRGAKEETVLSTMLLRSMKQAKYDA
ESLGHFGLAADYYTHFTSPIRRYPDLIVHRVMREVLENGGALPESRFEALNARMPDIATQ
SSERERTAVDAERDTEKLKKAEYMLDKIGEEFSGIISGVTSFGMFVELENTVEGLIRLSD
MTDDYYHFHELHMALIGERTSKIYRIGDEVEIRVSRVNMNEHTIDFELLNMRPRSSERIS
YVDARGAAGSGRNADRKRKKLNAAGRWVGIGGGSDERGGRRGSGGRSDGGRGGKGGRSQV
GGSGGKGEGRGLADGGREERHGGKGNGGSGSGRGQSVPDELDGGFYNSVVSGGGKRKKKP
RGGGAEAVNAPMPDESAKPVVRDEARGSRVRENGDPSGGRGDRDAQKVGRGDRESAKTAI
GKKRGPGLDMWGLPRSGNYKTIDDEADGGKSYGKRKGRGDGAARGAGKPSKPLVKPVAAV
PQESGGSEKPRKRKKKKE
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
ctgtgcacggagcaggagctgctcgatttcatgcgggaaaccgcttataaaccattgacg
tacaaagagcttgagaaacatttcggcattgaggacgcggtggaattcaaacaatttttg
cgtttgttgaccgagctggagcaggagggcaaggtgctgctgacgcgctccaaccgttac
ggagttccggaacggatgaatttgctgcgcggacgcatacagagcaatcccaaaggcttt
gcgttcctgattccggaggatagagagcatcccgacttgtacattcatgccaacgacatg
aaggggacgatgaacggggatatcgtgctggcgcgggtgtccgcgaagaacgagaacggt
cgattcgagggagagatcgtccgcatcgtcaagcgggcggtgacgcaggtcgtcggcttg
ttccacaatcacgagagctttggcttcgtggagccggacgataaaagaattacgaaggat
atttttatccgggcggaaaatttcaagggagcggtaaccgggcagaaggtcgtcgcgaac
attattacatatccggaaggtcgtacggccgctgaaggcgagattatcgagattctcggt
cacaaggacgatccgggcgtcgatattctgagtattatccgtaagcatggcttgccggag
ggctttccagacgacgtgctggccgaggcggaagcggcgccggatgcaatctctgaagag
gagatcgtgcagcagggccgtcgggatttgcggaataaggttatcgtgacaattgatggc
gaggacgcgaaggatctggatgacgcggtgaacgtggagcggctgccgaacggcaatctg
ctgcttggcgtgcatatcgctgacgtcagctactatgtgcgcgagaagtcgaagctggac
gaggaagcctacaatcgcggctgcagcgtctatctcgtcgatcgcgtcattccgatgctg
ccgcatcgcttgtcgaacggaatttgctcgctgaatccgaaggtggatcggctgacgatg
tcgtgcgagatggaattcgaaccggacacgatgaagcgggttcgctacgatctgtttacg
agcgttattagaacgaccgagagaatgacctatacgaacgtgcggaaaattgtgaacgaa
gaagacccggaagtggccgagcgttactcggagctagtggatacgtttaagctgatgaag
gagatggctttgggactgcgttcgatgcgaatgcgtcggggcgcgatcgatttcgatttt
caggaatcgaaggtgatcgtggacgaacagggcaagccggtcgatatcgtcaagcgggag
cggtcgatcgcagagcagattatcgaggagttcatgctggctgcgaacgagacggtggcg
gagcattttcactggttaaaggtgccgttcgtgtaccggattcacgaggagccgaccaac
gagaagttgttgacttttatgcagtttgcgagcaatttcggctatgcggttcggggcaaa
ggcaacaccgtccacccgagagcgctgcagacgctgctggaggaaattcgcggcgccaag
gaagagacggtgctcagcacaatgctgctgagatcgatgaagcaagcgaagtacgatgcg
gagagtctggggcatttcgggctggctgcggactactatacgcacttcacctcgccgatt
cgtcgttatcccgacctcatcgttcaccgcgtcatgcgcgaggttttggaaaacggaggg
gcgctcccggagtcgcgcttcgaagcgttgaacgcgcgtatgccggacattgcgacgcag
tcgtccgagcgagagcgcacggctgtggatgccgagcgggacacggagaagctgaagaag
gccgagtatatgctggacaagatcggcgaggagttctccggaattatcagcggcgtgaca
agcttcggcatgttcgtcgaattggaaaatacggtcgaaggacttattcgtcttagcgat
atgacggacgactattaccacttccacgagcttcatatggcgctgatcggggagcggacg
tccaaaatctaccggatcggcgacgaggtggaaattcgcgtgtctcgggtcaacatgaac
gagcatacgatcgatttcgagctgcttaacatgagaccgcggagctcggaacgcatcagc
tacgtggatgcaagaggagctgccggttccggtcgcaatgccgatcgcaagcgcaaaaag
ctgaacgcagctggccgttgggtcggcatcggcggcggctcggacgagcgcggcgggcgc
agaggctccggcggtcgcagtgacggcggacgtggcggcaaaggcggacgcagccaagtc
ggcggaagtggtggcaaaggcgaagggcgcggcctagctgatggcggacgcgaggaacgc
catggcggcaaaggtaacggcggctccggttctgggcgtggtcagtcggtgccggatgag
ctggacggcggcttctacaacagcgtcgtctccggcggcgggaagaggaagaagaagccg
cgcggcggcggagccgaggcggtcaacgcgcctatgccggatgagtcggcgaagcctgtc
gttcgggatgaggcaaggggtagcagagttcgcgagaacggcgacccaagcggagggcgc
ggcgatcgggacgcccagaaggtgggcagaggcgatcgtgagagcgccaaaacggccata
ggaaagaagcgcggtcctgggctggatatgtggggactgccgcgttccggcaactacaag
acgattgacgacgaggccgatggcggcaaatcctacggcaaacgcaaaggtcgcggagac
ggagcagcacgcggagcgggcaagccgtccaagccgcttgtcaagcccgtcgcggcggtt
ccgcaagagtccggcggcagcgagaagcctcggaaacgcaaaaaaaagaaggaataa
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