Cohnella sp. LGH: J4772_32570
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Entry
J4772_32570 CDS
T10185
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cohl Cohnella sp. LGH
Pathway
cohl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cohl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J4772_32570 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cohl03021
]
J4772_32570 (rpoB)
03400 DNA repair and recombination proteins [BR:
cohl03400
]
J4772_32570 (rpoB)
Enzymes [BR:
cohl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J4772_32570 (rpoB)
Transcription machinery [BR:
cohl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J4772_32570 (rpoB)
DNA repair and recombination proteins [BR:
cohl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J4772_32570 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QTH42172
LinkDB
All DBs
Position
complement(7897923..7901468)
Genome browser
AA seq
1181 aa
AA seq
DB search
MAGHLVQYGRRTRRSYARINEVLDVPNLIEIQQQSYQKFLDEGLREIFQDISPISDFTGN
LVLEFIDYSLGEPKYSVDESKERDVTFAAPLRVKVRLLNKETGEVKEQEVFMGDFPLMTE
TGTFIINGAERVIVSQLVRSPSVYFSTKVDKNGKKNYTATIIPNRGAWLELETDAKDIIY
VRIDRTRKIPVTVLLRALGFGTDAEILDLLGQDDYIRNTLEKDNTDSTEKALIEIYERLR
PGEPPTLENARSLLIARFFDPKRYDLANVGRYKVNKKLHIKNRLFNQRLAETLVDPSTGE
IIAEAGQMIDRRLLDQILPMLEKNVGFKNYRVVGGVQEAEDIPLQTVNVFSPLEDGKVVK
VISNGIIDKTVKNITPADIIASINYFMNLLQSIGNTDDIDHLGNRRLRSVGELLQNQFRI
GLSRMERVVRERMSIQDQNAITPQALINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELTH
KRRLSALGPGGLTRERAGFEVRDVHNSHYGRMCPIETPEGPNIGLINSLSSFARINEYGF
IEAPYRKVDPNTNRVTEEIVYMTADEEDNYIIAQANALLNPDGTFQEENIIVRYNKQTDN
ILTMPSDRVDYMDVSPKQVVSVATAMIPFLENDDSNRALMGSNMQRQAVPLLIPEAPFVG
TGMEHKSAKDSGVCIVSKYDGYIERVSANEIQLRRVEIIDGKEVKGDIIKYKLQKFMRSN
QGTCINQRPLVRRGDVIKKGDIMADGPSTDKGELALGRNVVVAFMTWEGYNYEDAILLSE
RLVREDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEISAG
DILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGTDGIVVDVKVFTRENGD
ELPPGVNQLVRAYIAQKRKISEGDKMAGRHGNKGVIARILPEEDMPFLPDGTPVQVVLNP
LGVPSRMNIGQVLEVHLGMACKLLGIHASTPVFDGASEHDVFDTMEEAGMARNGKWRLRD
GRSGELFEREVTVGVMYMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENVPEPGVPESFKVLIKELQSLG
MDVKILSGDEQEIEMKEIDDDEDSAGDKLNLNLEGSEVGVE
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatcttgttcagtatggccgccgtacgcggcgcagctacgcccgaattaat
gaagtgttggacgttcccaacctgatcgaaatccagcagcaatcgtaccagaaatttttg
gacgagggtttgcgggaaatttttcaggatatttcgccgatctccgattttacgggcaac
ttggtgttggagtttatcgactacagcctgggagagcccaaatattcggttgacgaatcc
aaggaacgcgacgtcaccttcgcggctccgcttcgcgtgaaagttcggttgcttaacaag
gaaaccggcgaagtgaaagagcaggaagtgttcatgggcgatttcccgctcatgacggag
acgggcacgttcattatcaacggcgcggaacgcgttatcgtcagtcaattggtgcgctcc
ccgagtgtctatttcagtacgaaagtggataagaacggcaagaagaattacaccgccacc
atcatcccgaatcgcggagcctggcttgagcttgagacggatgctaaagatattatatac
gtgcggatcgatcgtacgcggaaaattcccgttacggtgcttcttcgcgcgctcggtttc
ggaacagacgccgaaattctcgatctgctcggacaagacgattacattcgcaacacgctt
gagaaggataacacggattcgaccgagaaagcgctcatcgagatatacgagcgtcttcgc
ccgggcgagcctcctacgctcgagaacgcgcgcagcttgctgattgctcgtttcttcgat
ccgaagcgttacgatctggcgaacgtgggccgctataaggtcaacaagaagctgcatatc
aaaaaccgcttgttcaaccaacggcttgccgagacgctggtcgatccttcgacgggcgag
atcatcgccgaagccggccagatgatcgatcgcagactgctcgatcaaatcttgccgatg
cttgagaagaatgtcggctttaagaactatcgcgttgtcggcggcgttcaagaagcagag
gatattcctctgcagacggtcaacgtattctctccgctggaagacggcaaagtcgtgaag
gtaatctccaacgggatcatcgacaagacggttaagaacattacgccggcggatattatc
gcgtcgatcaactacttcatgaacctgctgcaaagcatcggcaacaccgacgacatcgac
cacttgggcaaccgtcgtctgcgttccgtcggcgaattgctgcaaaaccagttccgtatc
ggtctgtcccggatggagcgcgtcgttcgcgagcggatgtcgattcaggatcagaatgcg
atcacgccgcaagcattgatcaacattcgtccggtcattgcggcgatcaaggagttcttc
ggatcttcccagctgtcgcagtttatggaccagacgaacccgttggcggaattgacgcac
aagcgccgtctgtccgcgctcggaccaggcggtctcacgcgggaacgcgcgggcttcgag
gtgcgggacgttcacaactcgcactacggccggatgtgtccgatcgagacgccggaggga
ccgaacattggtctgatcaactcgttgtcctccttcgcgagaattaacgagtacggcttt
atcgaagcgccttaccgcaaagttgatccgaacacgaaccgcgtcaccgaagagatcgtc
tacatgaccgcggacgaagaggataactacattatcgcgcaagcgaacgcgttgctgaac
ccggacggtacgttccaagaagagaacattatcgtgcgctacaacaagcagaccgataat
atcttgacgatgccgagcgaccgggtagactacatggacgtttctccaaagcaggttgtg
tcggtcgcaacagcgatgattccgttccttgagaacgatgactccaaccgcgcgctgatg
ggatcgaacatgcagcgtcaagccgttccgctgctcattccggaagctccgtttgtcgga
acgggcatggagcataagtctgcgaaggactccggggtatgtattgtatccaaatacgac
ggatatatcgaacgcgtgtctgccaatgaaatccaactgcgccgcgtcgagatcatcgac
ggcaaggaagtcaaaggcgacattatcaaatacaagctgcaaaagttcatgcgttccaac
caagggacgtgcatcaaccagcgtcctctcgttcgccgcggcgacgtgatcaagaaaggc
gacattatggcggacggtccttctacggacaaaggcgagctcgcgctcggccgcaacgtc
gtcgttgcctttatgacgtgggaaggctacaactacgaggatgcgatcctgctctccgaa
agactcgttcgcgaggacgtctacacttcgattcacatcgaagagtacgagtcggaagcg
cgcgatacgaagcttgggcctgaagagattacgcgcgacatcccgaacgtcggcgaagac
gcgctgcgcaatctcgacgagcgcggcatcatccgcgtcggcgcggaaatcagcgcaggc
gacattctcgtcggcaaggttacgccgaagggcgttactgagttgacggcggaagagcgg
ctgctgcatgcgatcttcggcgagaaggcgcgcgaagtgcgcgatacgtcgctgcgagta
ccgcacggtacggacggcatcgtcgttgacgttaaagtgtttacccgcgagaacggcgac
gagctgcctcctggggttaaccagctcgtgcgtgcctatatcgcccagaagcggaaaatt
tccgaaggcgacaaaatggccggacgtcacggaaacaaaggggttatcgcccgtattttg
ccggaagaagatatgccgttcctgccggacggaacgcctgtacaggtcgttctgaacccg
ctgggggtaccttcccggatgaacatcgggcaagtgcttgaggtccatctcggcatggca
tgtaagctgctcggcatccacgcctctacgccagtattcgacggagcgtccgaacacgac
gtcttcgatacgatggaagaggccggcatggcgcgcaacggcaaatggcgccttcgcgac
ggacgttcgggagagctgttcgaacgcgaagttactgtcggcgtcatgtacatgatcaag
ctggcgcacatggttgacgataagattcacgcccgttccacaggtccgtactcgctcgtt
acgcagcagcctctcggcggtaaagcccagttcggcggccagcgcttcggggagatggaa
gtatgggcgctcgaggcttacggcgcggcctacacgctgcaagagattttgaccgtcaag
tccgacgatgtcgtcgggcgcgtgaaaacgtacgaatcgatcgttaagggcgagaacgta
ccggagccgggcgttcctgaatcgttcaaagtattgatcaaagagctccaaagcttgggt
atggacgtgaagatcctgtccggcgacgagcaggagatcgaaatgaaggaaatcgacgac
gatgaggattccgcgggagataagctgaatctgaacctcgaaggttccgaggttggcgtc
gaataa
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integrated database retrieval system
