Cohnella sp. LGH: J4772_34125
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Entry
J4772_34125 CDS
T10185
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
cohl Cohnella sp. LGH
Pathway
cohl03022
Basal transcription factors
cohl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cohl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
J4772_34125
09124 Replication and repair
03420 Nucleotide excision repair
J4772_34125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cohl03021
]
J4772_34125
03036 Chromosome and associated proteins [BR:
cohl03036
]
J4772_34125
03400 DNA repair and recombination proteins [BR:
cohl03400
]
J4772_34125
Enzymes [BR:
cohl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
J4772_34125
Transcription machinery [BR:
cohl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
J4772_34125
Chromosome and associated proteins [BR:
cohl03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
J4772_34125
DNA repair and recombination proteins [BR:
cohl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
J4772_34125
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
PDDEXK_1
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
QTH42448
LinkDB
All DBs
Position
complement(8278711..8280993)
Genome browser
AA seq
760 aa
AA seq
DB search
MADTISLSVRGLVEHVFRGGSLDSGFRAASTMIEGTKAHQKLQSKYGESDRKEVYLSAEI
VCGELLFVVDGRCDGLLASEDGAITIEEIKSTVRDIEAMTENETPEVHWAQAYFYAYMYA
MENRAERLRVRLTYVQVDTEEVRCFEREKTLAELEKYVRDVTEAYAPYARMLAENRRLRD
ESIAELEFPFTSYREGQRKLAGAVYKTICEGRKLFARAPTGIGKTVSTLFPAIKAIGTGK
LEQLFYLTARTITRTAAEDTLATMAQQGLVLRSVTITAKEKVCFQDQVDCRPESCPYANG
YYDRINEAILDLLGNETSIRRETIERYARKHVVCPFEMSLDAAYGADAVIGDYNYIFDPR
VSLKRLTGERKKRTALLVDEAHNLVDRAREMYSAVLEKREFLELEREFKGVSLSIHTAAK
TINKWFVALRKQSEGEPLVSKEVPDGLQVLIEEFLGRAERELAGGGPGAGSERLLNAYFA
AAGWIRTGKLYDERYVAYAEFERNEVRLKMFCLDPSHLLAQMGKGFLAHVFFSATLSPLG
YYMDMLGAGEEDYSVTLGSPFAKEQWEARIIPLSTRYADRERTKERLTAALLDFAGQRRG
NYLVFFPSYEYMNGIYEEFAAQSEGSWQTLLQTPDMAEEEREQFLARFDEANEETLVGFA
VMGGIFSEGIDLTGDRLNGVAVVGVGMPQIGLERNLIRSHFDAQGMNGFDYAYVYPGINK
VLQAGGRLIRTELDRGRLMLLDDRYLQPKYARLLPEEWRG
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atggcggatacaatatccctgtccgtcagggggcttgttgagcatgtgtttcgcggcggc
agtctcgattccggctttcgggcggctagtacgatgatcgaggggacaaaagcgcatcag
aagctgcaaagcaaatacggcgagagcgaccggaaggaagtatatttgagcgcggaaatt
gtgtgcggagagctcctgttcgtcgtggacggccggtgtgacggactgctggcctccgaa
gacggagcgataacgattgaggagatcaaatctacggttcgcgatatcgaagcgatgacg
gagaacgagactcccgaagtgcattgggcgcaggcttatttctatgcatatatgtacgcg
atggagaatagagcggaacggctgcgcgtccgactgacttacgttcaggtggacacggaa
gaggtcaggtgctttgaacgagagaagactctggccgagttagagaagtatgttcgggac
gtgacggaggcgtatgctccgtatgcgcgcatgttggccgagaataggcggcttagagac
gagagtatagcggaattggagtttccgttcacatcttaccgcgaggggcagaggaagctg
gcaggggccgtctacaaaacgatctgcgaaggccgaaagctgtttgcccgcgctcccacg
ggcatcgggaagacggtttcgacgctgtttcccgcgattaaggcgatcggcacgggcaag
ctggagcagttgttctacctgaccgccagaacgattacgcggaccgctgcggaggacacg
ctggcgactatggcccagcaggggctcgttctgcggtccgtgacgattacggcgaaggag
aaggtatgttttcaggatcaagtagactgccgcccggagagctgcccttacgccaatggc
tattacgaccggatcaacgaagccattctcgatctgctcggcaacgagacgtcgatccgc
cgggaaacgattgagcggtatgctcgcaagcatgtcgtatgtccgttcgaaatgtctctg
gatgcggcgtatggcgcggatgcggttataggggactacaactatattttcgatccgaga
gtgtcgttaaagagattgaccggcgagcggaaaaagcggacggcgctgctcgtagacgag
gcgcacaatctggttgaccgggcgcgggagatgtattcggccgtactggagaagcgggag
tttctggagctcgaacgggaattcaaaggggttagtctatcgatccatacggccgccaaa
acgattaacaaatggtttgtcgcgctgaggaagcaatcagaaggagagccgctcgtgtcc
aaggaggtaccggacggattgcaagtgttgattgaggagttccttggccgggcggagcgg
gagctggcagggggcggtccgggcgcgggaagcgagcggctgctgaacgcttacttcgcg
gctgcgggctggattcgaaccgggaagctgtatgatgaacgctatgtggcctatgcggag
ttcgagcggaacgaagttcggttgaaaatgttctgcctggacccttcgcatctccttgcg
cagatggggaaaggatttttggcgcatgtttttttctcggctacgctgtccccgctgggc
tactatatggatatgcttggcgcgggagaagaggattattcggttacgctcggttctccc
ttcgccaaggagcaatgggaggcgaggattattcctctctcgacgaggtatgcggaccgg
gaacggacgaaggagcggctgacggcggctttgttggattttgcgggacagagacggggc
aactatctcgtgttcttcccttcctacgaatatatgaacgggatttatgaggaatttgcg
gcgcagtcggagggaagctggcaaacgctgcttcagacgcccgatatggcggaggaagag
cgggagcagtttttggctaggttcgatgaggccaacgaggaaacgctagttggcttcgcg
gtcatgggcggtattttctcggaggggatcgacttgaccggggacaggctgaacggcgtt
gccgtcgtcggagtcggtatgccgcagatcggattggagcggaatctgattcgcagtcac
ttcgacgcgcaagggatgaacggttttgattacgcctacgtgtatcccggcattaacaag
gtgctgcaagccggaggccggctgattcgcacggagcttgaccgggggcggttgatgctc
cttgacgaccgctacctgcagccgaaatacgcccgtctgctcccggaggagtggcgaggg
tga
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