Cohnella sp. LGH: J4772_36165
Help
Entry
J4772_36165 CDS
T10185
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cohl Cohnella sp. LGH
Pathway
cohl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cohl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4772_36165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cohl03019
]
J4772_36165
Enzymes [BR:
cohl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J4772_36165
Messenger RNA biogenesis [BR:
cohl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J4772_36165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QTH42810
LinkDB
All DBs
Position
complement(8744728..8745999)
Genome browser
AA seq
423 aa
AA seq
DB search
MTFEQLQLIPPIIKAIAKENYTQPTPIQEQAIPPVLAGRDLFGCAQTGTGKTAAFLLPII
QLLSTQQGPPKGKRVIRSLILTPTRELAIQISDNAKSYGCFTNLRCGVIVGGVTQRAQEQ
LLEKGTDILIATPGRLIDLMNQGFVDLRHVQILVLDEADRMLDMGFIHDMKRIIAKLPAK
RQTLFFSATMPSEITSLVNTLLKNPVKIEITPVSSTAERIKQVLYYVDKPNKLPLLIDLL
QDKSIASAIVFTRTKHGADRVVRGLTKAKITAQAIHGDKSQNARQAALNNFKSGATRLLV
ATDIAARGIDVEELSHVINFNLPNIAETYVHRIGRTGRAGLSGIAISFCENEEIPYLKEI
EKLTKQRIPVIADHPYPMTLTKPEPATVTVDRVKVNSAPSKDDTRGHSGEAGRRRRRRSN
AGK
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaacaattgcagttgataccccctattattaaagcaatagctaaggaaaat
tatacgcagcccacgcctatccaagagcaggcaattcccccagtgctggcaggccgtgac
ttgtttggctgcgcccagacagggaccggcaagacagcggccttcttgctgccgatcatc
caactgctgagtacacagcagggtcccccgaaaggcaagcgtgttatacgctcactgatc
ctgacgcctacgcgtgagttggctattcagatttccgacaatgccaaatcttacggatgt
ttcacgaatctgcgctgcggcgtgatcgtgggcggtgtcacgcagagggctcaggagcaa
ttgttggagaaaggcacggacattctgattgccacgccgggacggttgatcgacctgatg
aaccaagggttcgttgacctgcgtcacgtgcagattctggtgttggacgaagccgatcgg
atgcttgatatgggcttcattcatgatatgaagcgaatcattgccaagctgccggccaag
cggcagacgttattcttctctgcgacgatgccgtctgagatcacgtcgttggttaacact
ttgctgaagaatccggtgaaaatcgagattactcctgtttcctcaacagcggagcggatt
aagcaggtcctctattatgtggacaagccgaataaactgccgctgttaatcgatctgctg
caggataagtcgatcgcgagcgctatcgtgttcacccgtacgaagcacggtgcggaccgg
gtagttcgaggcttgacgaaagcgaagattactgcgcaagcgattcatggcgacaagtcc
cagaatgcccgacaagcggcgctgaataacttcaaaagcggtgcgacacgcttgctggtg
gcgacagacatcgcggcacgaggcatcgacgttgaggaactatcgcacgttattaacttt
aatttgccaaatatagcggagacttacgtacatcggatcggccgtactgggcgtgcgggc
ttaagcggaatcgcgatttcgttctgcgagaacgaggagattccttatctgaaggaaatc
gagaagctgacgaagcagagaatcccggtaattgccgatcatccttacccgatgaccctt
acgaagccggaacctgcgacggtcacggtggaccgagtcaaagtcaacagtgcgccatcc
aaggacgatactcgcggacatagcggcgaggctggccgccgccgtagacggcgatccaat
gctggaaagtaa
DBGET
integrated database retrieval system
