Cohnella abietis: KCTCHS21_00520
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Entry
KCTCHS21_00520 CDS
T05979
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cohn
Cohnella abietis
Pathway
cohn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cohn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KCTCHS21_00520 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cohn03400
]
KCTCHS21_00520 (mfd)
Enzymes [BR:
cohn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KCTCHS21_00520 (mfd)
DNA repair and recombination proteins [BR:
cohn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KCTCHS21_00520 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
BBI30653
UniProt:
A0A3T1CXU3
LinkDB
All DBs
Position
62363..65884
Genome browser
AA seq
1173 aa
AA seq
DB search
MKPLIQSLVTDPDLISIIQGLKGGMREQLVAGLSGSARQVTLAGMYRELQRPILVITHNM
FSAQKMTDDLQECLSTDEVLLYPANELIAAETAISSPETSARRLEVLLKLAEGFRGIIVV
PFAGVRKFQPDLLTMSEAHIDLKVGDTLPMEQFLRGMIELGYERVDRVEQKSHLSVRGGI
VDFFPLASSSAYRVEWFDDEIDSIRTFDPADQRSIDKLESYTVQPCREWIAGERRFQNAA
KHAQDLLEKQLEKMADRQAKERLSSEISREIELLRQNVYFTEIYKYISLLYPERQTLLDY
IPKDTVLLMDEPNRLGETARQLERDESEWTTHLLQQGKSLPGFVLAVPAEQALYPKGFQT
VYMSLFVRQIPHTQPQNIINFVCRSMQNFHGQMNVLKAEMERWRKGGIKIVMLAGNSERA
DRMRRVLEDYQIEAPEILQGNLQSGFELPSIKLVVITEGEMFTQKQRKARRVDRHLDNAE
RIKSYTELKVGDYVVHQNHGVGKYLGIGTLEVGGIHKDYLHIVYAAGDRLSVPVEQFDLI
QKYVGNEDKEPKVSKLGGSDWNRAKSKVRSSVQDIADDLIKLYAARQSTVGFGFGEDTPY
QQEFEEMFPYEETVDQLRAIREIKEDMQTARPMDRLLCGDVGYGKTEVAIRAAFKAAIEG
KQVAVLVPTTILAQQHYETFRERFSGYPFNIKVLSRFRTRKEQTDTMKGLKAGTVDVVIG
THRLLSQDIIFKELGLLIVDEEQRFGVTHKEKLKRIKTNVDVLTLTATPIPRTLHMSMLG
VRDLSVIETPPENRFPVQTYVVEYSPTLIREAVERELARDGQVYYLFNRVQGIYQMAEQI
SALVPDARVAVAHGQMSEQELERTILDFLDGEYDVLVSTSIIETGVDIPNVNTLLVHDAD
RMGLSQLYQLRGRVGRSNRIAYAYFTYQRDKVLTEVAEKRLQSIKEFTELGSGFKIAMRD
LTIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIQSRKSEMGGVVLPPQPVNTQLDLGVD
AYLPPEYIYDSIQKIEIYKKVAAATSLEDVADLFEELMDRFGEPPKAVLNLMTVVRLKVY
GRQYGIESIVRRGDEVTLKLEERRREDVDSSKLKALEAKFQGRMVQAITAQQLLIRLKVR
GLDENALLALVEDFLVQYKEATKSKGELQDVAP
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgctaatccaatcgttagtaacggatcccgatttaattagcatcatacaagga
ttaaagggtggaatgcgggagcagctcgttgcaggcttgtctggctccgctcgtcaagtg
actcttgccgggatgtatcgtgaattacaacgtcctattcttgtaatcacacacaatatg
ttttcggcacaaaaaatgacggatgatctgcaagagtgtctatcgaccgatgaagttctg
ctctatccagctaatgagcttattgcagcggaaaccgcgatctccagccctgaaacgtcg
gctcgtcgactagaggtattgctcaagcttgcggaaggcttccgcggcattattgtcgtg
ccgttcgcgggtgttcggaaattccagccagacctgctaacgatgtctgaggcgcacatt
gatcttaaggtcggcgacactttgccgatggagcagttccttcgtggcatgattgaatta
ggctatgaacgggtagatcgggttgagcagaagagccatctgagtgtgcgtggagggatt
gtagatttcttcccacttgcctcttcaagtgcgtatcgggtggagtggtttgatgatgag
attgattctattcgaacgttcgatcctgcggatcaaagatctatcgataagctagagagc
tataccgtacagccttgccgggaatggattgcaggtgagagacgcttccagaatgcagcc
aagcatgctcaggatttgttggagaagcagctggagaagatggctgatcgtcaagcgaag
gaacgcttgagctcagagatttctcgagagattgagctcctgcggcaaaatgtttatttt
accgaaatttacaaatatatttctttgctctatccggaacggcagacactgctggactac
attccgaaggacactgttctgctcatggatgagccgaacaggctaggtgaaacagctcgt
cagcttgaacgcgacgaatcggagtggacgacccaccttctacagcaaggcaagtcattg
cctggctttgttctggctgtcccagctgagcaagcgctctatccgaaaggttttcagacg
gtatatatgtccttgttcgttcgccaaattcctcatacgcagccccagaacatcattaat
ttcgtctgtcgctcgatgcaaaatttccatggacagatgaacgttctcaaggctgagatg
gaacgttggcgcaaaggcggaattaagatcgttatgctcgcgggcaattccgaacgcgca
gatagaatgagacgggtattggaagattaccagattgaggcaccggaaattttgcagggt
aatctgcagagtggttttgagctgccatctattaagctggttgtcattacggaaggtgag
atgtttacccagaagcaacgtaaggctcgtcgggtagatcgtcatctggacaatgcagag
agaattaaaagctacaccgagctcaaagtcggggattatgtcgtgcaccagaaccacggt
gtgggtaaatatcttggaattgggacactcgaggtcggcggtattcataaggactatctt
catatcgtctatgcggcgggggatcgtctttccgttcctgtagagcaattcgatcttatt
caaaaatatgtgggcaatgaggataaggagccgaaggtaagcaagctcggcggatctgat
tggaatcgagctaaatcgaaggttaggtcctccgtgcaggatatcgccgatgatctaatt
aagctatatgcggcacggcaatctacggttggtttcggattcggggaggacactccttac
cagcaggaattcgaagaaatgttcccttacgaggaaactgtagatcagcttcgtgctatt
cgtgaaattaaagaagacatgcaaactgctcgtccgatggatcgcctgctgtgtggagac
gttggctatggcaaaacggaagtcgctattcgtgcggcgtttaaggctgccattgaaggg
aaacaggttgcagtcctagtgccgacaactattcttgctcagcagcattatgagacattc
cgcgagagattctccgggtatccgttcaatattaaagttctaagccgtttccggacacgc
aaggaacagacggatacaatgaagggcttgaaggcagggacggttgatgttgtcattggt
acacatcgtttgctgtcacaggatattattttcaaagagctaggcttgcttatcgtggat
gaggagcagcgcttcggagttacacataaggaaaagctgaagagaatcaaaaccaatgtg
gatgtgctgaccctgacggctactcctattccccgcacgcttcatatgtccatgctcggg
gtacgagatttgtccgttatagagacgccaccggaaaatcgttttcctgttcaaacctat
gtcgtcgagtatagcccaacgcttatacgggaagccgttgagcgggaattagctcgcgat
gggcaagtatattatttgttcaaccgtgttcaaggcatctaccagatggcagagcagatt
agtgctctcgtaccggatgctcgtgttgccgtagcccatggtcaaatgtcggagcaagag
cttgagcggactatcttggatttcttagatggggaatacgacgtgctagttagtacgagt
attatagagaccggagtagatatcccgaacgtgaacacgcttcttgtacatgatgcggac
cggatgggcttatcgcagctttaccagcttcggggtcgtgtcggacgctctaatcgtatc
gcctatgcgtactttacgtaccaacgggacaaggtattaacagaggttgctgagaaaagg
ctgcaatcaatcaaggaattcacggagctgggctccggattcaagattgctatgcgtgat
ttgactatccgcggagcgggtaatttgcttggcgctgaacagcacggattcattgcctct
gttggctttgatttgtactcacagatgctcgcagaagaaatacaaagccgcaaatccgag
atgggtggcgtcgtactgccgcctcagcctgttaacacacagctggatctgggtgtagat
gcttatttgcctccggaatatatttacgacagcattcaaaaaatcgaaatatataagaag
gtagcagcagccacttctttagaagatgttgcagacttattcgaagagctgatggaccgt
ttcggtgagccgcctaaagcggtgcttaatctgatgacggttgttaggctgaaggtatac
ggacgacaatatggaattgaatccatagtccgacgtggggatgaggttacattaaagctc
gaagagcgtcgacgtgaggatgtcgattcgagcaagcttaaggcactggaagctaagttc
caaggccggatggtgcaggcaataactgctcagcagctccttatccgcctgaaggtgaga
gggcttgatgagaacgccttattggcgttggtagaggattttctggtacaatataaagaa
gcgacaaaatcaaagggggaactacaggatgttgcaccgtaa
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integrated database retrieval system
