Cohnella abietis: KCTCHS21_16700
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Entry
KCTCHS21_16700 CDS
T05979
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cohn
Cohnella abietis
Pathway
cohn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cohn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KCTCHS21_16700 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cohn03019
]
KCTCHS21_16700 (recQ)
03400 DNA repair and recombination proteins [BR:
cohn03400
]
KCTCHS21_16700 (recQ)
Enzymes [BR:
cohn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KCTCHS21_16700 (recQ)
Messenger RNA biogenesis [BR:
cohn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KCTCHS21_16700 (recQ)
DNA repair and recombination proteins [BR:
cohn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KCTCHS21_16700 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
BBI32271
UniProt:
A0A3T1D2K2
LinkDB
All DBs
Position
1998354..2000168
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AA seq
604 aa
AA seq
DB search
MNSAAIEALRTYYGYDQFRAGQNTLIEAILEGKDVLGIMPTGAGKSICYQIPAILLPGVT
LVVSPLISLMKDQVDALNSAGIEATFINSSLSVKETNERMRHVAAGHYKLLYVAPERLES
EYFREMVRQLEIPLIAVDEAHCVSQWGHDFRPSYMTITSLLRDIEPRPVMAAFTATATDV
VKDDIVGRLRLREPVRVTTGYARDNLALTVVRNADKRDYVARFIQAHPDQAGIIYASTRR
EVESVFSFIHSLKIPVGKYHAGLPEEERAQTQDAFQKDDVQIIVATNAFGMGIDKSNVRF
VIHNNMPKNLEAYYQEAGRAGRDGDPGECVLLFSPQDVVTQKFFIDQSEAGEERKKNDYR
LLNEMVQFAHTEDCLQQTIVTYFGEQDSKPCGTCANCTDSRELKDVTEEAKYIFACVSEM
KQRFGITLTAKVLRGANDAKIRQFNFDRLRTYGLLKHIPEKQLTQLIHAFVADGYLRMSD
TAYPVIQLTEKVLDVMKGKELVHRRIEPEAPAVTRSSKSRYGSGSSTSSDAVTNTELFNA
LRQLRKRIADAENMPPFVIFHDATLREMCQQMPRTENAMRAVKGIGDAKYTKYGHAFLEL
IKQY
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgaattcagcagcgatagaggctttacgtacttattacggttatgaccagtttcgtgcg
ggacaaaatacattaattgaagctattcttgaaggtaaagatgttctaggcatcatgccg
acaggagcggggaaatcaatttgttatcaaatccctgcgatattactgccaggggttact
ttagttgtctcgccgctcatttcactcatgaaggatcaggtcgatgcgctgaattcggcg
ggtatcgaggcaacgttcattaatagctcgctttctgtaaaagaaacgaacgagcgaatg
aggcatgtggcggcaggtcactataagcttctttatgttgctccagaaagactagagtct
gagtacttccgcgagatggtgaggcagcttgaaataccgctcattgctgtggatgaagcg
cattgcgtctcacagtggggacatgattttcgtccgagctatatgacaataacgagcctg
ctgcgcgacattgagccgcgtccggttatggcagcatttacagcgactgcaacagatgtt
gtcaaggatgacatcgttggccggcttagattgcgcgagcctgttagagttacaactggt
tatgctcgtgataacttggcgctaaccgttgttcgtaatgcagataaacgtgattatgta
gctaggtttattcaggcgcatcccgatcaggcaggaattatatatgcatcaacccgccgc
gaggtggaaagtgttttttctttcattcattctttgaaaatacctgttggaaagtatcat
gcagggctccccgaagaggagcgtgcacaaactcaggatgcctttcagaaggatgatgtg
caaataatagtggctacgaatgcattcgggatggggatagacaaatctaacgtcagattt
gttattcacaacaatatgccgaaaaatttggaggcttattatcaggaagcgggtcgcgct
ggtagagatggcgatccgggggagtgtgtgctgctcttctctccgcaggatgtcgtaacg
cagaagttttttattgatcaaagcgaggcaggcgaggaacggaaaaagaacgattatcgg
ctgcttaatgagatggtgcagttcgcgcataccgaggattgccttcagcagacgatcgtt
acctatttcggcgagcaggacagtaagccatgcggaacatgcgccaactgtacagattcg
cgggagctgaaggatgtcacggaggaagcgaagtatattttcgcttgcgtgtcggagatg
aagcaacgcttcggaataaccttaacagctaaagtactgcgtggcgcaaatgatgcgaaa
atccggcagtttaacttcgaccgcctaagaacatacggattgctgaaacatattcctgag
aagcagcttacgcagctcattcatgcctttgttgcggatggttacttgcgaatgtcggat
acggcttatcctgtcattcaattgacggagaaagtactggatgtgatgaaaggaaaagaa
ctcgtccatcgccggatagaaccggaggctccagctgttactcgtagcagtaaatcgcgt
tatggtagcggttcttctacatcctcagatgctgtgaccaataccgagctatttaatgct
cttcgccagctgcgtaaacgaatcgcggacgctgaaaacatgccgcctttcgttattttc
cacgatgctacgcttcgagaaatgtgccaacaaatgcctcggacggagaatgccatgcgg
gctgttaaaggaatcggggacgcgaaatatacgaaatatggacatgccttcctagagctc
attaagcaatattaa
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