Cohnella abietis: KCTCHS21_40780
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Entry
KCTCHS21_40780 CDS
T05979
Symbol
spoVD
Name
(GenBank) stage V sporulation protein D
KO
K08384
stage V sporulation protein D (sporulation-specific penicillin-binding protein)
Organism
cohn
Cohnella abietis
Pathway
cohn00550
Peptidoglycan biosynthesis
cohn01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
cohn00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
KCTCHS21_40780 (spoVD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
cohn01011
]
KCTCHS21_40780 (spoVD)
Peptidoglycan biosynthesis and degradation proteins [BR:
cohn01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
KCTCHS21_40780 (spoVD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
PASTA
PBP_dimer_2
Motif
Other DBs
NCBI-ProteinID:
BBI34679
UniProt:
A0A3T1D9D1
LinkDB
All DBs
Position
complement(4538611..4540539)
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AA seq
642 aa
AA seq
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MKVSQVTVRKRLYFALIIAVIAFSALVLRLGYVQLWIGGEITKKAEDSWRRDIPFQAMRG
EIVDRNGTRLAYNVSSPTIMAIPVQIEDARGTAHKLSVPLGMSEDQLYKLLTKRKANVEL
KPGGRKLTTEKAQEIRKLALPGIVVSEDNKRYYPYANLASHVLGFTGSYNQGLTGLELQY
NERLTGLRGSVSYLSDAAGRKMPQSSDNFVPPQDGLNLQLTIDQTIQSIVERELDQAMLQ
YQAKSVIAIAMNPNTGEIYAMGSRPTFQPDKYQEVSSEVYNRNLPIWMTYEPGSTFKIIT
LAAALQEGKVNLEQEHFYDPGSIEVAGAKLRCWKKGGHGSQTFLEVVENSCNPGFVTLGQ
RLGKDKLFSYIYDFGFGKKTGIDLKGEENGIMFKPKQVGPVELATTAFGQGVSVTPIQQI
TAVSAAINGGKLFKPFVSKSWIQPNTGMILEETKPELVRQVISPETSKKVREALEKVVAQ
GTGRNAFLDGYRVGGKTGTAQKVINGRYSKDEHIVSFIGFAPANDPQLIVYVAVDNPQGI
QFGGVVAAPIVHNIMADALPFMGVKPSTDQVEKEYKYGSGEPRVVTVPNLVGKTVSDIYE
DMNSNFHLASSGSGTTVVRQAPAAGTRVDQGSVIRIYLGAGD
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
ttgaaggtatcacaggtaacggttcggaagaggctctacttcgcattaataattgcggta
attgccttcagtgcattggtgttaaggcttggttatgtgcagctatggataggcggggaa
attacgaagaaggccgaggactcctggagacgtgatataccgtttcaagcgatgcgggga
gaaattgtagatcgtaatggaactaggcttgcttataacgttagctcaccgacgatcatg
gcgatcccggtgcagattgaagacgcccggggaacggctcacaagctgtctgtgccacta
ggcatgtctgaagatcagctatataagcttttaaccaaacggaaggctaatgtagagctc
aagcccggaggtcgaaagcttacaacggagaaagcccaggaaattcgcaagctagcactc
ccaggaatcgttgtttcagaggataataaacgctactatccttatgcgaatttggcgtcg
catgtgcttggcttcacaggtagctataatcagggattgacgggcttggagctgcaatac
aacgaaagattaacgggattaagaggaagcgtctcctatctctctgacgcggcaggcagg
aagatgccgcaatcctctgataattttgttccaccgcaggatggtttgaatttgcaattg
actattgatcagacgattcaatccatagtggagcgtgagcttgaccaagctatgcttcaa
taccaagcgaagagtgtcattgctatagcaatgaatccgaacacgggggaaatctacgcc
atgggaagtcgcccgaccttccagcctgacaagtatcaagaagtatcttctgaggtgtat
aataggaatcttccaatatggatgacctatgagccgggttcaacctttaagatcattaca
cttgcagctgccttgcaggaaggaaaagttaatttagagcaggagcacttctatgatcct
gggtctatagaagtggcaggagcaaagctgcgctgctggaagaagggtgggcatggtagc
caaaccttcctagaggtagttgaaaactcctgtaacccagggtttgtaacgcttgggcag
aggttagggaaggataagcttttctcgtatatttatgatttcggattcggtaagaaaacc
ggaatcgatctgaagggtgaagagaacgggattatgtttaagcctaagcaggtcggacct
gtggagcttgccacgaccgctttcggtcaaggggtttccgttactcctatacagcaaatt
actgccgtatcggccgcgattaatggggggaaattgtttaagccctttgtctctaaatct
tggattcagccgaataccggaatgatattagaagaaacgaagcctgagcttgtcaggcag
gttatttcaccggaaacgtccaagaaagtaagagaggcactggagaaggtagttgcacaa
gggacagggcgtaatgcctttcttgacggctatagagttggagggaaaacggggacagct
cagaaggttatcaatggcagatactcgaaggatgagcatatcgtgtccttcatcgggttt
gcgcctgccaatgatcctcagctaatcgtttatgttgccgttgataatccacaaggtatt
cagttcgggggggttgtcgcagcgccgattgtgcataatattatggcagatgccttacct
ttcatgggggttaagccttcgactgatcaagtggagaaggaatataaatatggcagcgga
gagccacgggttgttacggtgccgaatctagtaggtaagacagtatctgacatctatgag
gacatgaattccaactttcatttagcaagttctggaagcgggacgaccgttgtacgtcaa
gcccccgcagcagggacgcgggttgatcaaggttcggtcatccgtatttatttaggagca
ggggactaa
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