Cohnella abietis: KCTCHS21_43910
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Entry
KCTCHS21_43910 CDS
T05979
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cohn
Cohnella abietis
Pathway
cohn03030
DNA replication
cohn03430
Mismatch repair
cohn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cohn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KCTCHS21_43910
03430 Mismatch repair
KCTCHS21_43910
03440 Homologous recombination
KCTCHS21_43910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cohn03032
]
KCTCHS21_43910
03400 DNA repair and recombination proteins [BR:
cohn03400
]
KCTCHS21_43910
Enzymes [BR:
cohn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KCTCHS21_43910
DNA replication proteins [BR:
cohn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KCTCHS21_43910
DNA repair and recombination proteins [BR:
cohn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KCTCHS21_43910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
DUF6282
Motif
Other DBs
NCBI-ProteinID:
BBI34992
UniProt:
A0A3T1DA58
LinkDB
All DBs
Position
complement(4897241..4900825)
Genome browser
AA seq
1194 aa
AA seq
DB search
MCDFVHLHVHSEYSLLDGAARIKDMAAKAAELGMKSLALTDHGVMYGAIPFYKACIEHGI
KPIIGMEAYITAGSRHDKQSRKEQPTYHLTLLAKNETGYRNLMKLTSIGHLEGFYYRPRI
DFEALTEHAEGLICLSGCMSSELSKQLMDDRYDDAKATALRYHELFGEDYYLEIQDHGIL
DQKKILASILKLSAETGIPLAATNDSHYMCEDDHSLQDVLLCIGTGKTIDDPDRFKISTN
QLYLKSGEDMAALFRHVPEAIANTVKIADSCTLELEFGRHILPEFSPLPAVSTAAQHLKE
LCERGLNERFSSLQVWEEEGFRKTAETRLQYELRVIGEMGFDDYFLIVWDFIRFAHENGI
VTGPGRGSSAGSLVAYVLKITDVDPLKHKLLFERFLNPERVSMPDIDIDFSDERRDEVIR
YVVEKYGAEHVAQIITFGTLAARAAVRDVGRVLNLPYGEVDKTAKLIPAAPGMSIERAMR
ESSEFRALAEGGSNAADLIDMAKRVEGMPRHASTHAAGVVISSDPLTDYVPLQEGTDGVP
LTQYSMENLEAVGLLKMDFLGLRTLSIIERSLASIREQTGREFRWGNVSYEDEATYALMG
RGETTGIFQLESPGMRRVLKEMKPTSFEDIVSVLALYRPGPMEFIPQFIRAKHGLVAVEY
PHAKLEPILSDTYGIIVYQEQIMQIASTMAGFTLGEADLLRRAVSKKKREVLDEQRKFFV
QGSLKQGYEEIEANSVYDLIVRFADYGFCRAHAAAYAVLSFQTAYLKAHYPIAFMASMLT
AVVGNQRKTAEYVDECRRMGIEVSKPDVNESGVLFTPINAVGQDGKGSIRFGLAGVKNVG
TQAIESVLRERQEKPFESLSDFCRRIDPRVCNKRVIESLVQAGAMESMPGHRAQQLAALE
PTISAAAIWRKEREELQIELFDFAESPSWNADLPIVPPYSQTQMLELERDLMGLYLSGHP
LDAYDEVMDDLRLDRLIDIADAADASTVFTAGMVVSLKPFVTKKGQPMAFLEIEDRIMGA
ELVAFPTVWSKAASIAKKGSLVFVRAKVQQGDEDYKLLADDIIPLDGTDLKHQVERLRKI
GQSGRSNGSYANRVSSAPVATGKTPAAPALSNPPASAPKVERVYIRIDEPHEQPATLIRL
KLLLKAHPGELTTVLRYERERRNVALSDEYKVNPTPELVSAMEKLLGEGSIRMK
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgatttcgtccatttacatgttcatagcgaatacagcctgctagacggcgcggct
cgcatcaaggatatggccgccaaagcggctgagcttggaatgaagtctctcgccttaaca
gatcatggtgtcatgtatggcgccattcctttctataaagcgtgcatagagcacgggatt
aaaccgattattggcatggaggcttatattactgcaggctcccgtcacgataagcaatcg
cgcaaagagcagcctacctaccatctcacattacttgctaagaacgagacgggttatcgc
aatctaatgaagctgacctccatcggacatttggaagggttctactatcgcccacgcatt
gatttcgaagctcttactgagcatgcagagggacttatttgcttgagcggctgcatgagc
agtgaattatccaagcagctcatggatgatcgttatgacgatgccaaagcgacagctttg
cggtaccatgaattgttcggcgaggattattacttggagattcaggatcatgggatattg
gatcagaagaaaatattggcaagcattctgaagctatcagctgagacaggtattccatta
gctgctacgaatgactcccactacatgtgcgaggatgaccattccttgcaggatgttctc
ctatgtattggaacgggaaaaacgatagatgatcctgatagattcaaaatatcgacgaac
cagctctatcttaaaagcggcgaggatatggctgcattgttccgccatgtccctgaagcg
atagccaatacggtgaaaatcgctgacagctgcaccttggagctggagttcggacggcat
atattaccggagttctcgcctttaccagcagttagtactgccgcgcagcatctgaaagaa
ttgtgtgagagaggcttgaacgagcggtttagtagcttgcaggtgtgggaggaagagggc
ttccgtaaaaccgctgagacacgtctacaatacgagctaagagttattggagaaatgggc
tttgacgattattttctcatcgtatgggatttcattcgctttgcccatgagaatggcatt
gtaacgggacctggacggggatcttcggcgggcagcttagttgcatatgtgctgaaaata
acggacgtagatcctcttaagcacaagctactttttgaacgttttcttaatccggaacgg
gtcagtatgcccgatattgatattgatttcagcgacgagcgtcgtgatgaagtcattcgt
tatgttgtagaaaagtacggtgccgagcatgtcgctcagattattacatttggtacgctt
gctgcccgtgcagctgttcgcgatgtaggtagagtgctcaacctgccctatggagaagtg
gataagacagctaagcttattcctgccgcacctggtatgtcgatagagcgggcaatgagg
gaaagctcggagttccgagctttagctgaaggcggctctaatgctgcggatttgatcgat
atggctaaacgggtagaaggaatgccgcgtcatgcttcgactcatgctgctggtgttgtt
atttcgtccgaccctttaacggattatgtaccgttgcaggaaggaaccgacggggttcct
ttaacgcaatattcgatggaaaatcttgaagcggttgggctgcttaagatggactttctt
ggcttgcgtactttatctattatcgaaaggtcgctagcttcgattcgagagcaaaccgga
cgtgagtttcgatggggaaatgtttcctacgaggatgaagcgacttatgcgttaatggga
cgcggtgaaacgactggcatattccaattagaatcgccgggtatgcggcgagtattgaag
gaaatgaagccgacctcattcgaggatattgtttccgtccttgccttgtacaggcccggt
ccaatggaatttatcccacagttcattagagctaagcatggcttggtagctgttgaatac
cctcatgcgaagctagaaccgatcttgtctgatacttacggtatcatcgtctatcaagag
caaattatgcaaattgcttcaacgatggcaggattcacgttaggggaagcggacttgctg
agacgtgcggtgagcaagaagaaaagggaagtgcttgacgagcagcggaagttttttgtc
caaggaagcctgaagcaagggtacgaagaaatagaagccaatagcgtatacgatctaatt
gtcaggttcgcggactatggcttctgtcgggcgcatgctgccgcatacgcggtgctttca
ttccagactgcttatctcaaggcgcattaccccattgcgttcatggcgtctatgctgacg
gctgtcgtagggaatcagcgcaagactgcggaatacgtagatgagtgccgacgaatggga
atagaagtatcgaagccggacgttaacgagagcggggttctttttactcccattaatgca
gttggtcaagatggcaagggttctattcgattcggcttggcaggggttaagaacgttgga
acacaagccatcgaaagtgtgctgcgggaaaggcaagaaaagcccttcgagagcttaagt
gatttctgtaggcgaattgatccacgtgtgtgcaataagcgggttatcgaatcgctagtg
caagcaggtgcaatggaatcaatgccagggcaccgcgcgcagcagcttgctgctttggag
ccaacgatttcggctgcagccatttggcgcaaggagcgggaggagctgcagatcgagctg
tttgattttgctgaatcacctagctggaatgccgatttgccgattgtgcctccgtactcg
cagacgcaaatgcttgagctagagagagacctgatggggctttatttatctggtcatcct
ctggatgcctatgacgaggtaatggatgatttaagactggatcggcttattgatatagct
gatgcagcggatgcttcaaccgtatttacggcaggcatggtcgtgtcgcttaagcctttt
gttactaagaaaggtcaaccgatggcatttttagaaatagaggatcgtattatgggcgca
gagctcgtggcattcccgactgtgtggagcaaagcggcttctatagcgaagaaaggctca
cttgttttcgtaagggctaaggttcagcagggtgatgaagattacaagctgctagcagat
gatattattcctttagatggcacggatttaaagcatcaagtagaacgcttgcgtaaaatt
ggacagtcaggacgttcgaacggcagctatgcgaatcgcgtctcttctgcgcctgtagct
acagggaaaacaccagcagcacctgccttgtccaaccctccagccagcgctcccaaggta
gagcgggtatatatccgtatagatgagccgcatgaacagcctgcaacgctaatccgcctt
aagctgctgctgaaggctcatccaggcgagcttacaaccgttctacgctatgagcgagaa
cgccgaaatgtcgctttaagtgacgaatacaaggttaatcctacaccggagctagtgtct
gctatggagaagctgcttggtgaaggcagcattagaatgaaataa
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