Cohnella abietis: KCTCHS21_47180
Help
Entry
KCTCHS21_47180 CDS
T05979
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
cohn
Cohnella abietis
Brite
KEGG Orthology (KO) [BR:
cohn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cohn03019
]
KCTCHS21_47180 (hrpB)
Enzymes [BR:
cohn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KCTCHS21_47180 (hrpB)
Messenger RNA biogenesis [BR:
cohn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KCTCHS21_47180 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
CON_HrpB
ResIII
Flavi_DEAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BBI35319
UniProt:
A0A3T1DB62
LinkDB
All DBs
Position
complement(5250943..5253432)
Genome browser
AA seq
829 aa
AA seq
DB search
MVLMPIDSVIPDLKQALLDNRNTVLTAAPGAGKTTRVPLALLNEPWLNGQKIIMLEPRRL
AARSSAKYMASTLGEAVGGTIGYRVKMDTKVGPLTRIEVVTEGVLTRMLQADPSLEGIGL
VIFDEFHERSLQADLGLALCLQCQDLLRDDLKMLVMSATLEAEPVAELLGGVPVISSVGR
SYPVETIYRPKPSGSGYMTDGVAQVIIEALRAHEGDVLVFLPGIGEIRSVESKLRASLRD
ASIRIFALHGGLSAEAQDEVLAPVASGQRKIVLATSVAETSLTVEGITVVIDSGLMRVSR
FSPRTGMSRLETITVSVASADQRRGRAGRLMPGTCYRLWSQEEEQSLSSRSAPEIMEADL
APLLLELYMWGVKDAAQLAWLDNPPAPALQQARDLLVQLGALDKDGQFITPHGRQMAEFG
KHPRIAHMLLRAIPIGFGSLASELAVLLEARDIIRFEGKAPTSDLRVRLEALRGRGGYAT
DEGARRRLVEEVKLLQREHGIKGAADPEGTDCGLLLAFAYPDRIGRRRDNGKYLLSGGRG
AEFASGQALAHEQWIVVADVDDMGSDSRIRLAAPISMEQIATHLQDEMNEETQIYWDSES
KSVRGRSRKRLGALQLGEKPLSRPPANLVLQALLEGIRTEGLELLPWTKAARQLQERTVF
VRHHDNAWPDLSDLALLNSLEQWLAGYIDGMKGRSDLQRLNLKDILESMLSWEQRRELEN
SAPTHWTVPSGSRIPIDYSDINAPLVAVRLQELFGLPETPRIAGGRVPLTLHLLSPAQRP
VQVTRDLASFWSHTYFEVRKDLKGRYPKHYWPDNPLEAEATRRAKPFRT
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggttctgatgcctattgattcggtaatacctgatttgaagcaagcgttgttagataat
cgcaacactgttctgacagcggctcctggtgcagggaagacgacacgtgtgcccttagcg
ttactaaatgagccatggcttaatggacagaaaatcatcatgctagagccccgtcgcctg
gctgctcgcagctcggctaagtatatggccagcacgcttggtgaagctgttggtggaacg
attggttacagagtgaagatggatacgaaagtggggccacttactcgtattgaggttgtg
acggaaggtgtcctaacaagaatgctacaggccgatccctcgttggaagggatcggtctt
gttatctttgacgaatttcatgagcggagccttcaagcggatttggggctggcgctttgt
ttgcaatgccaggatttgcttcgggatgacttgaagatgctcgtcatgagcgcaacatta
gaggcggagcctgttgcagaattgcttggaggcgtacctgtcataagcagtgtgggacgg
agctatccggtagagacgatctatcgtcccaagccttctggcagcggctatatgactgat
ggggtggcacaggtaatcattgaagcgcttcgggctcatgagggggatgtgctcgtcttc
ttgccaggtatcggtgaaatacgttcagttgaatctaagctaagagccagtctacgggat
gcttctattcgaatattcgctctgcatggcggtttaagcgcagaggcgcaggatgaggtt
ctggctcctgtagcttccggacaacgtaaaatagtgctagcaacctccgtggcagaaacc
agcttaacggttgaaggtattactgtcgttattgatagcggattaatgagagtctcccga
ttttcaccacgtacggggatgtcccgtttggagacgataacggtatctgtcgcatcggct
gaccagcgccgtggacgcgcaggacggctcatgcctggcacatgctatcggctgtggagc
caagaggaggagcaaagcttatcctcgcgtagcgctccagaaatcatggaggcagacctg
gccccactattattagaattatatatgtggggtgtgaaggatgctgctcaactggcttgg
ctagacaacccacctgctccagccttgcagcaagctcgcgacctgcttgtgcagctggga
gcattagataaggatggacaattcattactccgcatgggagacaaatggctgaattcggg
aagcaccctcgaattgctcatatgctattaagagcaatccctattggattcggtagctta
gctagtgagcttgccgtattgctggaggctagagatattattcgctttgaaggtaaagct
cctacttctgatttaagggtaaggttggaggctcttagaggcagaggaggctacgcaaca
gatgagggagcccgcaggagactcgtggaggaagttaagctgttgcagcgcgagcatgga
ataaaaggggcagcagatccagagggaacagactgtggactcttactagcttttgcctat
ccggatcgaattggacgcaggagggacaatggtaagtatttgctaagcgggggaagagga
gcggagttcgcaagtgggcaagcattagcccatgagcaatggattgtcgtcgctgatgta
gacgatatgggatcggatagtcgaatccgtctcgctgctcccatttctatggagcaaatt
gctacgcatctgcaggatgagatgaacgaggaaacgcaaatttattgggatagcgaatcc
aaatcagttcgtggccgaagccgcaaaaggctgggagctttgcagcttggggagaagcct
ttaagtcgccctccagcaaatcttgtgctccaagcacttcttgagggtatcagaacggaa
ggcctggagctgctgccttggactaaagcggctcgacagctacaggagagaacagtattt
gtccgtcatcatgataatgcttggccggacttgtcggatctagctctgctgaattcattg
gaacaatggttggcgggatatatagatggaatgaagggtcgatccgatttacagcgattg
aatcttaaggacatcttagagtccatgttatcgtgggagcagcggagagagcttgaaaat
agtgcgccgactcactggactgtaccaagcggatcacgcatcccaattgattatagcgat
attaatgcccctcttgtcgctgttcgtctgcaggagctcttcggcttgccagaaacgccg
cgcatcgccggtgggcgagtgccattaacactgcacctgttgtcgccagcacagcgtcct
gtgcaagtgacaagagatcttgctagcttctggagtcatacttattttgaggtcaggaag
gacttaaagggacgttaccctaagcactattggcctgataatccgcttgaagcagaggca
acccgaagggcaaagccattcagaacttag
DBGET
integrated database retrieval system
