Cohnella abietis: KCTCHS21_54470
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Entry
KCTCHS21_54470 CDS
T05979
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cohn
Cohnella abietis
Pathway
cohn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cohn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KCTCHS21_54470 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cohn03021
]
KCTCHS21_54470 (rpoB)
03400 DNA repair and recombination proteins [BR:
cohn03400
]
KCTCHS21_54470 (rpoB)
Enzymes [BR:
cohn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KCTCHS21_54470 (rpoB)
Transcription machinery [BR:
cohn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KCTCHS21_54470 (rpoB)
DNA repair and recombination proteins [BR:
cohn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KCTCHS21_54470 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
BBI36048
UniProt:
A0A3T1DDK1
LinkDB
All DBs
Position
complement(6148742..6152287)
Genome browser
AA seq
1181 aa
AA seq
DB search
MAGHLVQYGRRARRSYARINEVLEVPNLIEIQQQSYQKFLDEGLREIFQDISPISDFTGN
LVLEFIDYSLGDPKYSVDESKERDVTYAAPLRVKVRLLNKETGEVKEQEVFMGDFPLMTE
TGTFIINGAERVIVSQLVRSPSVYFSTKVDKNGKKNYTATVIPNRGAWLELETDAKDIIY
VRIDRTRKIPVTVLLRSLGFGTDAEILDLLGQDDYIRNTLEKDNTDSTEKALIEIYERLR
PGEPPTLDNARSLLIARFFDPKRYDLANVGRYKVNKKLHIKNRLFNQRLAETLVDPSTGE
IIAEAGQMIDRRLLDQILPMLEKNVGFKNYRVTGGVYESEDIPLQSVSIYSPLEDGKVVK
VISNGIIDKSVKNITPADIISSINYFMNLLQSVGNTDDIDHLGNRRLRSVGELLQNQFRI
GLSRMERVVRERMSIQDQNAITPQALINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELTH
KRRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSSFARINEYGF
IEAPYRKVDPHTNRVTDDIVYMTADEEDNYIIAQANAQLNPDKSFTDENIIVRYNKQTDN
IITMPSDRVDYMDVSPKQVVSVATAMIPFLENDDSNRALMGSNMQRQAVPLLIPEAPFVG
TGMEHKSAKDSGVCIVSKYDGFIERVSANEIQLRRVEIIEGKEVRGDIVKYKLQKFMRSN
QGTCINQRPLVRRGEIIKKGDIMADGPSTDTGELALGRNVVVAFMTWEGYNYEDAILLSE
KLVREDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEISAG
DILVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGTDGIVVDVKVFTRENGD
ELPPGVNQLVRAYIAQKRKISEGDKMAGRHGNKGVIARILPEEDMPFLPDGTPVQVVLNP
LGVPSRMNIGQVLEVHLGMACKILGIHSATPVFDGARETDVFDAMEEAGMKRNGKWQLRD
GRSGELFEREVTVGVMYMIKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEME
VWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENVPEPGVPESFKVLIKELQSLG
MDVKILSGDEQEIEMKEMDDEDDATGDKLNLNLEGTEVGVE
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatcttgttcagtatggtcgccgtgcacggcgcagctacgcccgcattaat
gaagtgttggaagtcccgaacctgatcgaaatccaacaacaatcgtaccagaagtttttg
gacgagggcttgcgggaaatttttcaggatatttcgccaatttcggattttaccggcaac
ttagttttggagtttatcgactatagcttaggtgatccgaaatattcagttgatgaatcg
aaagaacgcgatgtaacttacgcagctccacttcgtgttaaggttcgtttgctcaacaag
gaaacaggcgaagttaaggaacaagaagtatttatgggtgattttccgctcatgaccgaa
acgggaacattcattatcaacggtgcggaacgtgtaatcgtcagccagttggttcgctcc
ccgagtgtctacttcagtactaaggtagataagaacggtaagaaaaactatacggctaca
gtcattccgaatcgtggagcttggctggagcttgagacggatgcaaaggatatcatctac
gtgcgtatcgatcgcactcgcaaaatcccagtaactgtactccttcgctctttgggcttt
ggaactgatgcagaaattctggatttgctaggacaagatgactacatccgcaatacgctt
gagaaggacaatacggattctactgagaaagcgctcattgaaatctacgagcgtcttcgt
ccaggtgaaccgccaactttggataatgctcgcagcttgctaattgcacgcttcttcgat
ccgaagcgttacgacctagcaaacgtaggacgttacaaggttaataaaaagctgcatatc
aaaaaccgtttgttcaaccagcgcctagcggaaacgcttgtagatccatccactggagag
atcatagctgaagctggacaaatgattgatcgcagattgttggatcaaattctccctatg
cttgagaaaaacgtagggttcaaaaactatcgggtaacgggtggcgtttacgagtcagag
gatattcctttgcaatccgtcagcatctactcgcctttagaagatggaaaagtagttaag
gttatttccaacggcatcatcgataagtcggtgaagaatattacgcctgcggacattatc
tcgtctattaactacttcatgaatttgctgcaatccgtcggtaacacagatgatatcgat
cacttgggtaaccgtcgtctccgctctgttggagaattgctgcaaaatcaattccgtatc
ggcttgtcccggatggaacgggttgtacgggaaagaatgtccattcaggatcagaatgcc
attacgcctcaggcgctaatcaatattcgtcctgttattgcggcaattaaagagttcttc
ggatcctctcaattgtcccaatttatggatcaaaccaatccgcttgcagaattgacgcat
aagcgtcgtctatcggctctcggacctggtggtttgactcgggaacgcgcgggcttcgaa
gttcgtgacgtccatcactcccactatggccgtatgtgtccaatcgagacaccagaagga
ccgaacatcggattgatcaactccttgtcttccttcgcacggattaacgagtatggcttt
atcgaggcaccttatcgtaaagtcgatcctcatacaaaccgggttacggatgacatcgtc
tacatgacggctgatgaagaggacaattatatcatcgcgcaagcgaatgcacagttgaac
cctgacaagtctttcacagacgaaaatattattgtccgttataacaaacagaccgataat
atcatcacaatgccgagcgatcgcgttgactacatggatgtatcccctaagcaggttgtg
tctgtcgctacagcgatgataccgttcctcgagaacgatgactccaaccgtgcgctcatg
ggatctaacatgcaacgtcaagccgttccgttgttaataccggaagcaccattcgttggt
acaggaatggagcacaagtctgctaaagactccggggtatgtattgtgtccaaatatgac
ggattcatcgaaagagtttctgccaatgaaatccaattgcgtcgagttgagataatcgaa
ggcaaagaagtcagaggcgatatcgttaaatacaagcttcagaagtttatgcgttctaac
caaggaacgtgcattaaccaaaggccacttgttcgtcgcggagaaattattaaaaaaggc
gacattatggctgatggaccttcaacggatacgggcgagctagcgcttggtcgcaacgtt
gtcgttgccttcatgacttgggaaggctacaactatgaggatgctatcttgttgtccgag
aagctagttcgggaagatgtctatacttcaattcacattgaggaatatgaatcagaagcc
cgtgatactaagctcggacctgaagagatcactcgtgatattccgaacgtcggggaagac
gcgcttcgcaatcttgatgagcgtggaattatccgtgtcggtgctgaaattagcgcaggt
gatatcctcgtaggtaaagttacacctaagggtgtaacagagcttacagctgaagaacgc
ttgttgcacgcgatttttggagagaaggctcgtgaagtccgtgatacctctcttcgcgta
ccgcatggtacagacggaatcgtagtcgacgttaaagtgtttacccgtgagaacggtgat
gagcttcctcctggcgttaaccaactggtccgtgcttacatcgcacaaaaacggaaaatt
tccgaaggcgataaaatggctggacgtcatggtaacaaaggggttatcgctcgtatcctg
ccggaagaagatatgcctttccttccagatggcactccggttcaagttgttcttaacccg
ctcggcgtaccttctcggatgaacatcggtcaagtactggaagttcacttaggaatggct
tgtaagatccttggcattcactctgctacgcctgtattcgacggagcgcgtgaaacggat
gtattcgatgctatggaagaagccggtatgaaacgtaacggtaaatggcagctgcgtgat
ggacgttcaggtgaattgtttgaacgtgaagttactgttggtgtcatgtatatgatcaag
cttgcgcatatggtcgacgacaaaatccatgctcgttctactggaccttactctctcgtt
acacaacagccgctgggtggtaaagctcagttcggtggtcaacgtttcggggagatggag
gtttgggcattggaggcttatggcgctgcctatacgcttcaagaaatattgaccgtcaaa
tcagatgatgtcgtcggtcgtgtcaaaacctacgaatcgattgtcaaaggcgagaacgtg
ccggagccgggtgttccagaatcgttcaaggtattgattaaggaactccaaagtctcggt
atggatgttaaaatcttgtccggagatgagcaggagatcgaaatgaaggaaatggacgac
gaggacgatgccacgggagataagctaaaccttaatctcgagggtacagaagtcggtgtc
gaatag
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integrated database retrieval system
