Corynebacterium pseudotuberculosis CIP 52.97: CPCIP5297_04370
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Entry
CPCIP5297_04370 CDS
T02054
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
coi
Corynebacterium pseudotuberculosis CIP 52.97
Pathway
coi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPCIP5297_04370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
coi03021
]
CPCIP5297_04370
03019 Messenger RNA biogenesis [BR:
coi03019
]
CPCIP5297_04370
Transcription machinery [BR:
coi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CPCIP5297_04370
Messenger RNA biogenesis [BR:
coi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CPCIP5297_04370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
NACHT
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ART29257
LinkDB
All DBs
Position
916680..918866
Genome browser
AA seq
728 aa
AA seq
DB search
MTSFTSGKGDERTSVTTTDNGAQRNLAALRLPELRKIAAEMGLKGTSALRKGDLIAAISG
AQGGKAAQSGHSAAPAAKRNARAQAAPKAEKDSAPVENSVPEVSKEQQEKADQVPAKESK
SRRRRVLKTTGAMDSAHETASSEPISQESSPAEEEKPRRRRVTRRVEVSSEKRDPAENSP
QDKTDTPSESNDGVARVSENGDAEDENRYESRSAARRARRNRARREHREDRQTSQREDNH
AEGDRSSNDEEQRKEASVDNVKTTGRREAPEQQAADQPQTRETREGSENEHPRQRNGRHH
ERGERGDRNRRNRRNRRGRDRDDHRDNSNIEPREDEVLQNIAGILDIVDSNVAFVRTSGY
HAGSADVYVNNQMIRRLGLRAGDAITGQVRMNGDNNHGGHHGHNRGRNRQKYNPLVRVES
VNGMSVEEAKARPDFSKLTPLYPNQRLRLETEPKILTTRVIDLIMPIGKGQRALIVSPPK
AGKTTILQNIANAIATNNPECYLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSEHTA
VAELAIERAKRLVEQGQDVVVLLDSITRLGRAYNNSSPASGRILSGGVDSNALYPPKRFL
GAARNIENGGSLTIIATAMVETGSAGDTVIFEEFKGTGNAELKLDRKISERRVFPAVDVN
PSGTRKDELLLVPEEARIMHKLRRILAALDNQQAIDLLIKQLKKTKSNGEFLMQIASSAP
MAADAEEE
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
gtgacatcttttacctctggtaaaggcgatgaaaggacatctgtgacaacaacagataac
ggcgcacagcgtaatcttgctgcattgcgtctgcccgagctgcgtaagatcgccgctgaa
atgggtctaaaaggcacctctgcattgcgcaaaggtgatcttatcgccgcgattagcggc
gcgcaggggggaaaagctgcacagagcgggcatagtgccgcgcctgcagcaaagcgtaat
gctcgagcacaggctgcccccaaagcagagaaagactctgcacctgtagaaaactcggtt
ccagaagtatctaaggaacaacaagaaaaggctgaccaggttccagctaaggagtccaag
tcgcgtcgccgtcgcgttctaaagaccacaggagccatggattcagctcatgaaacagct
tccagtgagcctatttcacaggaatcctcgccggcagaggaagaaaagccacggcgacgc
cgtgtgactcgtcgcgtagaagtttcttcggagaagcgcgaccctgcagagaattctccg
caggataaaacggatacgcccagcgaatcgaatgatggtgtagcacgagtttccgagaat
ggcgatgcagaggatgagaatcgctatgagtcgcgttcggctgctcgacgtgctcggcgt
aatcgtgctcgtcgggaacaccgtgaagaccgtcagacgtctcagcgcgaggacaatcac
gctgagggtgatcgatcttctaacgatgaggaacagcgcaaagaagcatccgttgataac
gtgaagacaacggggcgtcgagaggcccctgagcagcaggctgcagatcagccgcaaact
cgggaaactcgtgagggctctgaaaacgagcatcctcgtcagcgcaatggccgtcaccat
gagcgtggcgagcgtggggatcgtaaccgtcgtaaccgccgcaatcgtcggggccgtgac
cgcgacgatcatcgggataactccaacattgagccccgtgaagacgaggttttgcagaac
atcgccggcatcctcgacattgtggatagcaatgtcgctttcgtgcggacctcgggctat
catgcaggctctgcagatgtctacgttaacaaccagatgattcgtcgtttgggtttacgt
gctggcgatgccatcaccggacaggttcggatgaacggcgataacaaccatggcggacat
catgggcataatcgtggacgcaaccgccaaaagtacaatccgttggttcgcgttgaatct
gtcaacggcatgtccgtagaagaagctaaggctcgtccggacttttctaagctcactccg
ctgtacccgaaccagagactgcgtttggaaacagagccgaagatccttaccactcgtgtg
atcgacttgatcatgcctatcggcaaaggccagcgtgcgcttatcgtgtctccgccaaaa
gctggtaagactacgattttgcaaaacatcgctaatgccatcgccacgaataatcccgag
tgctatttgatggtggtgcttgtcgacgagcgccctgaagaagtcaccgacatgcagcgc
tccgtcaagggtgaggttattgcctctaccttcgaccgtccgccaagcgagcacactgct
gtagccgagttggcaatcgagcgtgctaaacgactcgtagaacaaggacaagacgttgtg
gtgcttctagattccatcactcgccttggtcgcgcttataacaactcttcgcctgcttca
ggtcgtatcctgtccggtggcgtggattcgaacgctctctatcctccaaagcgcttcctg
ggtgcggctcgtaacatcgaaaatggtggttcgctgaccatcattgctactgcaatggta
gaaactggttctgcaggcgacaccgtgatctttgaggagtttaagggcaccggcaacgca
gagctcaaactggatcgtaagatctccgagcgtcgagtattccccgcagtagacgttaac
ccgtcaggaactcgtaaggacgagctgcttttggttcctgaagaagctcgcatcatgcat
aagttgcgcaggattctcgcagccttggacaaccaacaggccatcgacttacttattaag
cagcttaagaagaccaaatctaatggtgagttcttgatgcagatcgcttcaagtgcaccg
atggctgcagacgccgaggaggagtaa
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