Corynebacterium pseudotuberculosis CIP 52.97: CPCIP5297_08100
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Entry
CPCIP5297_08100 CDS
T02054
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
coi
Corynebacterium pseudotuberculosis CIP 52.97
Pathway
coi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPCIP5297_08100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coi03019
]
CPCIP5297_08100
03009 Ribosome biogenesis [BR:
coi03009
]
CPCIP5297_08100
Enzymes [BR:
coi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CPCIP5297_08100
Messenger RNA biogenesis [BR:
coi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CPCIP5297_08100
Ribosome biogenesis [BR:
coi03009
]
Prokaryotic type
rRNA processing factors
CPCIP5297_08100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AEQ07117
LinkDB
All DBs
Position
complement(1745301..1748705)
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AA seq
1134 aa
AA seq
DB search
MAEETTKKVPARRATRKAATRKAAEDTATQDTVVPVDRDAIGDRIRVHALAKLASVSSRE
LIATLATLGLTKVAQSTLTREEALKLLDAHHIDSYSAEEKLRHRVEKNVENEIHQIEEKV
ERELNPDAEAAKLDDPEEPEKLRRRIEKNVENEIHQIEEKVERELQDREVVREEDHQDSS
ENAVAEDTTVVITEDEAAELLSDIEPEITPAPGLSAPAFPTPLFIAPTPAEELESNVDDS
VEDDEESAQSRRRRRGRRGTGRGKRTDSEDSFSEDLEESPDSEDAGEEKTEELITEPVGI
KGSTRLEAQRRRRAEMREESRNKRHIVSEAEFLARRGSVKRTMIVRERERSDHPGVVTQV
GVLEDDLLVEHFVTSDTQSSMIGNIYLGRVQNVLPSMEAAFIDIGKGRNGVLYAGEVDWR
AAGLGGRGRRIEQALKSGDQVLVQVSKDPAGHKGARLTTQISFAGRYLVYVPNGRTAGIS
RKLPAPERKRLKNILKEVVPKDGGAIIRTAAENVSAEAIAADVNRLHKLWNQIQELTEKE
KNSKGAKPVTMYEEPNMLVKVVRDLFNEDFSELIVDGDRAWNTVHAYIQSVAPELQDRLI
KFDREAHEDRDAFEVHRVDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSG
GNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLSENQDLVLRRLTEALGRDRT
RHQISEVTSLGLVQMTRKRLGTGLLETFATECEHCEGRGVIIHDDPVEQSVSDAAIEKSS
RARSGKAKAARKHGVAHQDPAQHPAAIAMQHHEEAGSAAGSNTSDASTADTSPVADTRTS
IDDLAAAVVIDDVELEKVVDSVASDVAEPGLLEPSKEKKGRRRRRGLRNSKRKDRGAADD
VMDIVDAALDRAFTEDPDEPSGADHLPLSGNKLSRSTTSVTYEEALAAFENSPRRKRAVR
GNSVSDHAPKPEDFKRIDVTEGAEEDTFASEASEETYSGSRRSRRVARKQGETRKAVENP
TQSEAADDTESTGNVKIDSLRGRRRRAVRRRFQETNLAPLVVETAEEESTAKGRRRRRAV
RKTVVKAPRKAVIGEESSGVYVKDETVPETREASSAGRGRRRVARRVRTATKRN
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaagagaccacaaaaaaggtgcctgcgcgtcgggcgacacgaaaggctgcaact
cgaaaggctgctgaggatactgctacgcaggatacggtggtacctgttgatcgtgatgcg
atcggcgaccggattagggtgcatgcgctggctaaattagcgtcggtaagttcacgtgaa
ctcatcgctactcttgccacactagggcttactaaggttgcgcagtcgacgctgacccgc
gaagaagccctgaagctactcgacgcccaccacatcgacagctactcagccgaagaaaag
ctgcgccaccgggtggaaaagaatgtggaaaatgagatccaccagatcgaagaaaaagta
gagcgtgagcttaaccctgatgctgaggccgccaagctcgatgatccggaggaacccgag
aagctgcgccgacgaatagaaaagaatgtggaaaatgagatccaccagatcgaagaaaaa
gtagagcgtgaactgcaagaccgagaggtagtgcgcgaggaagaccaccaggattcttct
gaaaacgcagtagcggaagatacgaccgtagtgatcaccgaggacgaggcagcggagctt
ctttcagatatcgagccagagatcacgcccgctccgggactgtctgccccggctttcccc
acgccactgttcattgcgccgacgccagcggaagaactggaaagcaacgtcgatgactct
gttgaggatgatgaggagtcggcgcagtctcgtcgtcgccgtcgcggtcgccgaggcaca
gggagaggaaagcgaactgattctgaggattccttctctgaggatctcgaggaatccccg
gacagtgaagacgctggtgaggaaaagaccgaggaactgatcaccgaaccggtcgggatc
aaagggtctacgcgcctggaagcgcagcgtcgtcgtcgtgcggagatgcgagaagaatcg
cggaataaacggcatatcgtttcagaagcagaattcttggcgcgccggggatctgtaaag
cgcaccatgattgtgcgggaacgcgagcggagtgatcatcctggagtagtgacccaggtg
ggcgttttagaagacgatctactagttgagcactttgttaccagcgatacgcagtcctca
atgatcggaaacatatatttgggacgcgtccaaaatgtgttgccgagcatggaggccgca
tttatcgatattggaaaaggccgcaatggcgttctctatgcgggcgaagtggactggcgt
gccgcaggcttaggaggccgggggcggcgtattgagcaagccctcaagtctggcgatcag
gtgcttgttcaggtatccaaagatcccgcaggccacaagggtgcgcggttgaccacccag
atttctttcgcagggcgttacctggtgtacgtgcccaacgggcgcaccgcgggtatttct
cgcaagcttcctgctccagagcggaagcgcttgaagaatatcctcaaagaggttgtgcct
aaagacggcggagctatcatccgtaccgctgcggaaaatgtctctgcggaggctatcgct
gcggacgtgaatcggttgcacaagctgtggaatcagattcaagagctcacggagaaggag
aaaaactccaagggtgctaagcctgtcaccatgtatgaagagcccaacatgttggtgaag
gtggtgcgtgatcttttcaacgaggacttctcggagctgattgtcgacggcgaccgtgct
tggaataccgttcacgcctatatccagtcagtagctcctgagctacaggatcgtctgatt
aagtttgatcgggaagcacacgaggatcgcgatgcgtttgaagtgcaccgcgtagatgaa
cagctgcacaaggccttgtcgcggaaagtgtggcttccctctggcggaaccttagtgatc
gaccgtacagaagctatgacagtcattgacgtgaacaccgggaagttcacgggttctggc
ggcaatcttgaagaaacggtaactcgtaataaccttgaggctgcagaagaaatcgttaga
cagatgcggttgcgcgatcttggcggcatgatcgttgtggacttcattgacatggtcctt
tcagaaaaccaggatctagtgttgcgtcgactcaccgaggcactaggccgtgaccggacg
cgtcaccagatttctgaggtgacgtcgttaggcctggtgcaaatgactcgaaagcgtctt
ggcacgggcttgctagagacttttgccaccgaatgcgagcattgcgagggccgtggagtc
atcattcacgatgaccccgtggaacaaagcgtttcggatgccgctattgagaagtcctcg
cgcgcacgttccggaaaggctaaggcagctcgaaaacatggggttgctcatcaagatccg
gcgcagcatcctgctgctatagcaatgcagcatcatgaggaggctggctctgccgccggt
tccaatacctctgacgccagcactgctgacaccagccctgttgctgatactcgaaccagc
attgatgatcttgccgcagctgtggtgatcgatgacgtagagcttgagaaggtcgtggac
tccgtggcgagtgacgttgcggaacctggtttgctggagccatccaaagagaagaagggg
cgcagaaggcgtcgcggcttgcgcaattccaagcgaaaggacaggggagcagcggacgat
gttatggacatcgtcgacgcggctttggaccgagcttttacagaagatccagacgagccc
tcaggtgccgatcatctgccgctatcgggtaataagctcagccgcagcactacttctgtg
acctacgaggaagcgctggcagcgtttgagaattctccgcgtagaaaacgtgcggtgcgt
ggaaactccgtatcggatcatgcgccaaaaccggaggattttaagcgtatcgacgtcacc
gagggagccgaagaagacacgtttgcaagcgaagcttctgaggagacctattcaggtagc
cgccgctcacgccgcgtggccaggaaacagggagaaacgcggaaggccgtggagaaccca
acgcaatcagaggctgcggacgataccgagtcgacgggtaacgtgaagatagattctcta
cgcgggaggcgccggcgtgccgtgcgcaggaggttccaagaaacaaatcttgctccatta
gtcgttgagactgcggaagaagaatcgacggcgaagggtcgacgccgtcggcgtgccgtg
cgtaaaacggtggtgaaagcgccccgtaaggctgttatcggtgaggaatcttccggtgtg
tacgtgaaagatgagacggtgccggaaacgcgcgaggcatcatctgcgggccgagggcgg
cgacgcgtggcgcgtcgggtgcgcacggcgacaaagagaaactaa
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