Campylobacter ornithocola: CORN_0016
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Entry
CORN_0016 CDS
T06736
Symbol
recJ
Name
(GenBank) single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
coj
Campylobacter ornithocola
Pathway
coj03410
Base excision repair
coj03430
Mismatch repair
coj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
coj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CORN_0016 (recJ)
03430 Mismatch repair
CORN_0016 (recJ)
03440 Homologous recombination
CORN_0016 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
coj03400
]
CORN_0016 (recJ)
DNA repair and recombination proteins [BR:
coj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CORN_0016 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CORN_0016 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CORN_0016 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QKF56586
LinkDB
All DBs
Position
14034..15605
Genome browser
AA seq
523 aa
AA seq
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MLNKAKIKEILHQRFINDTHVKLCDLPMPSCLKDVYKGALRVKEAIEKNQKLAIVGDYDV
DGVISCVILSEFFDDIGYDYVVKIPNRFKDGYGLNEEIINELDGVDLIITVDNGIAAFDA
AELCLQKGIDLIITDHHMPPVTLPKAYAIINPKQQDCEFPDIEICGAQVAWYLVAAIKEV
CKINYNMCKFIELLSIAIIADMMELRDLNRALVRKGIECINDSKRVAFKAIKQYFGKDKF
ELDNISFLIAPLINSAGRMDDAIISYKFLHSKNINEVMGYLEQIIAYNNSRKDEERELFR
QCLDQVDENDPVIIVNGQNWHEGVLGIVASRLAKHFNKPAFVFSECEQKAKASVRSVGRI
DILNVIEQAKEFVLSYGGHKGAAGVLVELEKFSIFKNKLYEICQNIPKDDFYNADEILGS
IDPNEVDFELLEILEFFEPFGHKNPRPYFKFDKLFVKNKKRLGKEENHIKLILTQGNKTL
EALFFNFDYEPEIGENIDFIASISKNNFRGLITPQLTIKEILR
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgctaaataaagccaaaataaaagaaatcttacaccaacgttttatcaacgatacgcat
gtaaagctttgtgatttacctatgccatcttgtttaaaagatgtctataagggtgctttg
cgtgttaaagaagcaattgaaaaaaaccaaaagcttgctattgttggagattatgatgta
gatggagtgatttcttgtgtgattttatctgaattttttgatgatatcggatatgactat
gtggttaaaattccaaatcgttttaaagatggatatggtctaaatgaagaaatcatcaat
gagcttgatggggtagatttaatcatcactgtagataatggtatagcagcatttgatgca
gcagagctttgtttgcaaaaaggaattgacttaatcatcactgatcatcatatgccccca
gttactttaccaaaagcttatgctattatcaatcccaaacaacaagattgcgaatttcct
gatattgaaatttgtggtgctcaagtggcttggtatttagtcgctgcgataaaagaagta
tgtaagattaattataatatgtgtaaatttatagagcttttatctattgcaattattgca
gatatgatggaacttagagatttaaatagggctttagttagaaaaggtatagagtgtatc
aatgattctaagcgtgtagcatttaaagcgattaagcagtattttggtaaagataaattt
gaactagacaatattagctttttaattgcacctttgattaatagtgcaggtagaatggat
gatgcgattatttcttataaatttttacactctaaaaatattaatgaagttatgggatat
ttagaacaaattattgcttataataatagccgtaaagatgaagaacgcgaactttttagg
caatgtttagatcaagttgatgaaaatgatcctgtgattattgttaatggtcaaaattgg
catgaaggtgttttaggaatagttgcaagtcgtttggcaaaacattttaacaagcctgcc
tttgttttttcagaatgtgagcaaaaggctaaagctagtgttagaagcgtaggtaggata
gatattttaaatgttatagaacaagctaaagaatttgttttaagttatggtggacataaa
ggtgctgctggggttttagtagagcttgaaaaatttagcatttttaaaaataaactttat
gaaatttgtcaaaatattcctaaagatgatttctataatgctgatgagattctaggtagt
attgatccgaatgaagttgattttgaacttttggaaatactagaattttttgaacctttt
gggcataaaaatccaagaccatattttaaatttgataagctttttgtaaaaaataaaaaa
agactaggtaaagaagaaaatcatataaaacttattttaacacaaggaaataagacttta
gaagctttattttttaactttgattatgaaccagaaattggggaaaatattgattttata
gctagtatttccaaaaataattttagaggtttaattacgccacaacttaccatcaaagaa
attcttagataa
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