Campylobacter ornithocola: CORN_1013
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Entry
CORN_1013 CDS
T06736
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
coj
Campylobacter ornithocola
Pathway
coj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CORN_1013 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coj03019
]
CORN_1013 (rnr)
03016 Transfer RNA biogenesis [BR:
coj03016
]
CORN_1013 (rnr)
Enzymes [BR:
coj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CORN_1013 (rnr)
Messenger RNA biogenesis [BR:
coj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CORN_1013 (rnr)
Transfer RNA biogenesis [BR:
coj03016
]
Prokaryotic type
tRNA degradation factors
CORN_1013 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_1st
OB_RNR_2nd
CSD2
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
QKF57526
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All DBs
Position
995423..997363
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AA seq
646 aa
AA seq
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MKELFNQLSYGLNASEITNKNKQLIRELLTCDIIKFYKNKYYLKNGFTFGKIDISANGTG
FLESFDDAFKRDLLIENKNLKGANYADIVVAKLLPIKKKRPSAKVALILKRAHKTSLVMT
KKYGEAILGINIQTGLTCALKASQKSLKVLPLGTILKIENHDNNITEVIGHIDDDFVDEK
ISLALFNKNAIFDNLCENEARAYGNEVDASMYPSRKDLRNLNFCTIDPIDAKDFDDAIYY
DKNEHAIYIAIADVSAYVHAYSAIDKEARSRGFSIYFPHIAIPMLPRSLSENICSLKPNE
DRLAFCFKISLDQNNEVIKEELFEAIINSKRRFNYDEVDEYLQTHEDLGVINWLYEVFKI
TQNLRKKRLKNACEFKTQELRMTLDKNNKLIKTRLENDTASHNLIEDCMLLANKAAAKLI
NIGVFRNHLSPDYKKIDQLLADLSTLSIDINPKNNIIELFKDIQILANELNIREEVDKLI
IKAQKKAEYSSENAGHFGLGFDKYTHFTSPIRRYSDLILHRLLKAKINNDEKMFNYLLLN
IQNTCEELSLLEREADKVAWHFMDRKFARWAKENVGKRFKALVIENQSSLQVKLNDEIKG
ALITIIGSNANLLENVEVEITEVDIVGAKIFGKITKHFSLERNQNV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaattatttaatcaactaagctatggtctaaatgctagtgaaattaccaataaa
aataagcaactcatcagagagttattaacctgtgatattattaaattttataaaaataaa
tactacttaaaaaatggttttacttttggcaagattgacatttcagctaatggaacagga
tttttagaaagttttgatgatgcttttaagcgtgatttgctcatagaaaataaaaattta
aaaggagcaaactatgctgatatagttgtagcaaaactactccctattaaaaaaaagcgt
ccgagtgctaaagttgctttaatacttaaacgtgctcataaaacttctttagttatgact
aaaaaatacggcgaagcaatccttgggataaatattcaaacaggactcacttgtgcttta
aaagcctctcaaaaatccttaaaagttttaccattaggaactattttaaaaatagaaaat
catgataacaacattaccgaagtgataggacatattgatgatgattttgtagatgaaaaa
atttctttagcactttttaataaaaatgcaatttttgataatctatgtgaaaatgaagca
agagcttatggaaatgaagttgatgcaagcatgtatccttcaagaaaagatcttagaaat
ttaaatttttgcaccattgatccaattgatgcaaaagactttgatgatgcgatttattat
gataaaaatgaacatgctatttatatagctatagctgatgtgagtgcttatgtgcatgct
tatagtgctattgataaagaagcaagatcaaggggtttttcgatttattttcctcatatt
gctatacctatgctaccaagatctttgagtgaaaatatttgttcactaaaacctaacgaa
gatagattagcattttgttttaaaataagtttagatcaaaacaacgaagtgattaaagaa
gagctttttgaggctattattaactcaaaacgccgttttaattacgatgaagttgatgag
tatttacaaacacacgaagatttaggtgtaattaattggctttatgaagtttttaaaatc
actcaaaatttacgtaaaaaacgtctgaaaaacgcatgtgaatttaaaactcaagaactt
agaatgactttagataaaaataataaactcataaaaacacgtctcgaaaatgacactgct
tcgcataatttaattgaagattgtatgcttttagctaataaagccgcagcaaaactcatt
aatataggagtttttagaaatcacttaagtcctgattataaaaaaatagatcaattgcta
gctgatctttcaacacttagtatagatattaatcctaaaaacaatatcatagaactattc
aaagatattcaaatcttagcaaatgagctaaatataagagaagaagttgataaactcatc
atcaaagcgcaaaaaaaggcagaatattctagtgaaaatgcaggacattttggtttaggt
tttgataaatatacccattttacaagccctattagaagatattctgatcttattttacat
agacttttaaaagctaaaatcaacaatgatgaaaaaatgtttaattatttgcttttaaat
atacaaaacacttgtgaggaattaagcttattagaaagagaagcagataaagttgcatgg
cattttatggatagaaaatttgcaagatgggcgaaagaaaatgtaggaaaaagatttaaa
gctttggtaattgaaaatcaaagctcattacaagtaaaattaaatgatgaaattaaagga
gctttgattaccatcataggctcaaacgcgaatttattagaaaatgtagaagtagaaatt
accgaagtagatattgttggtgctaaaatttttggtaaaatcactaagcattttagttta
gaaagaaatcaaaatgtataa
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