KEGG   Corynebacterium occultum: COCCU_05700
Entry
COCCU_05700       CDS       T07880                                 
Name
(GenBank) hypothetical protein
  KO
K03628  transcription termination factor Rho
Organism
cok  Corynebacterium occultum
Pathway
cok03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cok00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    COCCU_05700
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cok03021]
    COCCU_05700
   03019 Messenger RNA biogenesis [BR:cok03019]
    COCCU_05700
Transcription machinery [BR:cok03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     COCCU_05700
Messenger RNA biogenesis [BR:cok03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     COCCU_05700
SSDB
Motif
Pfam: ATP-synt_ab Rho_RNA_bind Rho_N Spore_III_AA AAA_25 S1CSD-TOTE-2 NACHT AAA
Other DBs
NCBI-ProteinID: QGU07084
UniProt: A0A6B8W0N8
LinkDB
Position
1209374..1211623
AA seq 749 aa
MTQTDSAAANAGGEQQNLTSLRLPELRKIAADKGLKGVSGLRKGDLITAIQTGSVPTAKK
EAAPTAIAEAPQAAAPQPEASQAETTRAEPAKASRRRVVKRTAPAQQETPVPEEAPTRAE
TAEAAAPQAETPRHETNRHSEPAREQHRHDDTEDSSDQDGSEGSADDDGRYESRSAARRA
RRNRARQSQRERSHHEPRDSRDDRDEQRGQQSEAQEDHESPARQDQQQEAEHSPEQQGNQ
RPQRGTRDFHRDSNREQGERREERSRDSRDSRNDRDEQRGQQQRNDRNDRDEHDEQRGQQ
QRNDRHDRNDRDEHDGDRRGRRNRRGRRTRNDRNDRDHRDHRNERDTQQHDDSQQHADNL
QDVAGILDILDQNTAFVRTTGYHASAADVFVPNQLIRKFGLRRGDAVTGQVKMSGAGNSH
QGGRGNRQKWNSLVRVDSANGLSLEEARKRPDFAKLTPLYPNQRLRLETDSKILTTRVID
LIMPIGKGQRALIVSPPKAGKTTIMQNIANAISTNNPECYLMVVLVDERPEEVTDMQRSV
NGEVIASTFDRPPGEHTAVAELAIERAKRLVEQGKDVVVLLDSITRLGRAYNNSSPASGR
ILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMVETGSAGDTVIFEEFKGTGNAEL
KLDRKISERRVFPAVDVNPSGTRKDELLLQPDEARIMHKLRRILSALDNQQAIDLLIKQL
KKTKSNGEFLLQVASSAPMAADMEDEDYS
NT seq 2250 nt   +upstreamnt  +downstreamnt
gtgacccaaacggatagcgccgcggcaaacgccggcggcgagcagcagaacctgacctcc
ctccgactgcccgagttgcgcaagatcgctgcagacaagggactcaagggtgtgtcggga
ctgcgcaagggggatctgatcaccgcgatccaaaccggaagcgtacccaccgccaagaag
gaggctgcgccgaccgccattgcggaagcaccacaggcggcagcaccccagccggaggct
tcccaggcagaaaccaccagggctgagcctgccaaggccagccgccgtcgggtggtcaag
cgcaccgcccccgcccagcaggagaccccggtaccggaagaagcccccaccagggctgaa
accgccgaggcggcggcaccacaggcggaaactccccgccacgaaaccaaccgccacagc
gaacccgctcgtgagcagcaccgccacgacgacaccgaggacagttccgaccaggacggc
tccgagggttccgccgatgatgatggccgctacgagtcccgctctgcagcgcgccgggcg
cgccgcaaccgggcccgccagagtcagcgtgagcgcagccatcatgagccccgtgactcc
cgcgacgaccgtgatgagcagcgtggccagcagtctgaggcgcaggaggaccacgagtcc
ccggcgcggcaggatcagcagcaggaggccgagcactccccggagcagcagggcaaccag
cgtccgcagcgcggcacccgggacttccaccgggacagcaatcgcgagcagggggaacgt
cgtgaagaacgttcccgcgactcccgcgactcccgtaacgaccgcgatgagcagcgtggc
cagcagcagcgcaatgaccgtaacgaccgcgatgagcacgatgagcagcgtggccagcaa
cagcgcaatgaccgtcatgatcgcaatgaccgcgatgagcacgatggtgaccgtcgggga
cgtcgcaaccgtcggggacgtcgcacccgtaatgaccgtaatgaccgggaccaccgtgac
caccgcaatgagcgcgatacccagcagcacgatgattcgcagcagcacgcggataacctg
caggatgtcgccggtatcctggacatcctggatcagaacaccgcttttgtccgcaccacc
ggttatcacgcctctgcggctgatgtctttgtgccgaaccagctgatccggaagttcggg
ctgcgtcgcggtgacgccgtcaccgggcaggtcaagatgtccggtgccggcaacagccac
cagggtggccgtggcaaccgccagaagtggaacagcctggtccgggtggacagcgccaat
ggtctcagcctcgaggaggcccggaaacgaccggacttcgccaagctgaccccgctgtac
ccgaaccagcgtctgcgcctggagaccgactcgaagatcctgaccacccgcgtgatcgac
ctgatcatgccgatcggtaagggtcagcgtgcgctgatcgtctcgccgcccaaggccggt
aagaccacgatcatgcagaacatcgccaacgcgatctccaccaacaacccggagtgctac
ctcatggtggtcctggttgatgagcgtccggaggaggtcaccgacatgcagcgcagtgtc
aacggtgaggtcatcgcctccaccttcgaccgtcccccgggagagcacaccgccgtggct
gagctggccatcgagcgcgccaagcgcctggtggagcagggcaaggacgtggtggttctg
ctggactccatcacccgtctgggccgtgcctacaacaactcttccccggcttcgggacgc
atcctctccggtggtgtggactccaacgccctctacccgccgaagcgtttcctgggtgcc
gcccgcaacatcgagaacggtggctccctgacgatcatcgccaccgccatggtggagacc
ggttccgccggtgacaccgtgatcttcgaggagttcaagggcaccggcaacgccgagctg
aagctggaccgcaagatctccgagcgtcgggtattcccggccgtggatgtcaacccctcc
ggcacccgcaaggatgagctgctgctccagcccgatgaggctcgcatcatgcataagctg
cggcgtatcctgtcggcactggataatcagcaggccatcgatctgttgatcaagcagctg
aagaagaccaagtccaacggtgaattcctgctgcaggtcgcctcgagcgcaccgatggcc
gcggacatggaagatgaggactactcctag

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