Capnocytophaga sp. oral taxon 323: AM608_00945
Help
Entry
AM608_00945 CDS
T04076
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
col
Capnocytophaga sp. oral taxon 323
Pathway
col03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
col00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AM608_00945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
col03019
]
AM608_00945
03016 Transfer RNA biogenesis [BR:
col03016
]
AM608_00945
Enzymes [BR:
col01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AM608_00945
Messenger RNA biogenesis [BR:
col03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AM608_00945
Transfer RNA biogenesis [BR:
col03016
]
Prokaryotic type
tRNA degradation factors
AM608_00945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
HutF_N
Motif
Other DBs
NCBI-ProteinID:
ALC96321
LinkDB
All DBs
Position
207719..209926
Genome browser
AA seq
735 aa
AA seq
DB search
MIPEVKKEIIELGDGRIITIETGKLAKQADGAVVVQMGNAMLLATVVSAKEINPETDFLP
LTVDYREKFAAAGRFPGGFFKRETRPSDQEILTMRLVDRVLRPLFPKDYHAETQVMIQLI
SHDENVMPDALAGLAASACLAVSDIPFDGPISEVRVGRVNGKFIVNPSREQLEASDIDIM
VGASKDFVAMVEGEMDEVSEKDMAEAIKFAHEAIKPHIEAQLRLAEKVGKTEKRTYEPEV
ENEEVKAKVYPLAYEKCYAIAKENTTKQERGEKFNAVKEECLALFTEEELEELTPIITRY
FDEAEKEAVRNLILNENIRLDGRNTTQIRPIWCEVGYLPSAHGSSIFTRGETQSLTTVTL
GTSREANVIDLPSEQGEERFYLHYNFPPFSTGEARPLRGTSRREIGHGNLAQRALKRMIP
EDCPYTVRVVSEILESNGSSSMATVCAGTLALMDSGVQMVKPVSGIAMGLITDGERYAVL
SDILGDEDHLGDMDFKVTGTADGITACQMDIKIKGLSYEILEKALNQAREGRMHILGKIT
DTIAKPNPTVKPHAPKIVKMDMPKEYIGAFIGTGGKNIQDLQARTNTTIVVEEVGELGII
EILGTDEAGIQEAIEAVNAVKFEPVEGETYTVKVVRLVEFGAFVEFVPGKDSLLHISEVS
WDRVDKIEDVLKEGDIIEVKYLGIDPKTKKTRVSRKALLPRPPREDRPKSDKPYNDKPRN
DRNKGHNNHQKPRQE
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgattccagaagtaaaaaaagaaatcatcgaattaggtgatggtcgtatcatcactatc
gaaactggcaagttggctaaacaagccgacggtgctgttgtggtgcaaatgggcaatgcg
atgctattggctactgtagtatctgcaaaagaaatcaatcctgaaactgactttttgcct
cttactgtagattatcgtgagaagtttgcagcagcaggtcgtttccctgggggctttttc
aaacgtgaaacgcgccctagcgatcaagaaatacttacaatgcgcttggtagaccgcgta
ttgcgtccactattccctaaagattatcacgctgaaactcaggtgatgattcagcttatt
tctcacgacgagaatgtaatgcccgacgctttggcaggtcttgctgcctctgcttgtttg
gcagtgtccgatattccgttcgatggtcctatttccgaagtacgcgtaggtcgtgtaaac
ggtaaatttatcgtaaatccaagccgtgaacaattagaagcttctgatattgatattatg
gtaggtgcttctaaagactttgtggcaatggtagaaggtgaaatggacgaggtgagcgaa
aaggatatggctgaagctattaaattcgcacacgaggctatcaaacctcatattgaggca
caattgcgtttggctgaaaaagtaggtaagaccgaaaaacgtacttatgagccagaagta
gaaaacgaagaggtaaaagcaaaagtatatcctttggcttacgaaaaatgctatgctatt
gccaaagaaaatacaaccaaacaagaacgtggtgaaaagttcaatgcggtaaaagaagaa
tgcttagcactcttcaccgaagaagaattagaagagcttactcctatcatcactcgttat
tttgacgaggctgaaaaagaagccgtgcgcaaccttatcttaaacgaaaatattcgttta
gacggtcgtaacactacccaaatacgccctatttggtgcgaagtaggctacttaccatca
gcacacggttcatctatctttacacgtggtgaaacccaatcgcttactaccgttaccttg
ggtacttcacgtgaagcaaacgtaatcgatttgccttcagaacaaggtgaagaacgtttc
tacttgcattacaacttccctcctttctctaccggtgaagcacgtccgttacgcggaaca
tcacgccgtgagataggtcacggtaacttagcacaacgcgccctcaaacgtatgattcct
gaggattgcccatataccgtgcgtgtagtatccgagattttggaatctaacggttcatca
tctatggctaccgtatgtgcaggtactttagccttgatggattcaggggtacaaatggta
aaacctgtatcgggtattgctatgggactcatcaccgatggcgagcgttatgcagtactt
tccgatatcttaggtgatgaagaccacttaggtgatatggacttcaaagtaaccggtaca
gccgatggtattaccgcttgccaaatggacatcaaaatcaaaggtctttcttacgaaata
ctcgaaaaagctttgaaccaagcccgcgaaggacgtatgcacatcttgggtaaaatcacc
gatacgattgccaaacctaaccctactgtgaaacctcacgcgcctaaaatcgttaagatg
gatatgcctaaggaatacatcggggcattcatcggtacgggtggtaagaatatccaagac
ttacaagcgcgcaccaatactactatcgtggtagaagaagtgggcgaattgggcattata
gaaatcttaggtaccgacgaagcaggtattcaagaagctattgaagcagtaaatgcagtg
aaatttgaacctgtagaaggagaaacttacactgtgaaagtagtgcgcttggtagagttt
ggggcttttgtagagtttgtacctggtaaagattcattgctccacatctcagaagtatct
tgggacagagtagacaaaatagaagacgttcttaaagagggtgatattatagaagtgaaa
tatctcggtatcgaccccaaaaccaagaaaacaagagtatcgcgcaaagctttgttgcca
cgtccaccgcgtgaagatcgtcctaagtctgacaagccttacaacgacaagcctcgcaac
gaccgcaataaaggacacaataatcaccaaaaaccacgtcaagaatag
DBGET
integrated database retrieval system
