Capnocytophaga sp. oral taxon 323: AM608_01365
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Entry
AM608_01365 CDS
T04076
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
col
Capnocytophaga sp. oral taxon 323
Pathway
col03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
col00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AM608_01365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
col03021
]
AM608_01365
03019 Messenger RNA biogenesis [BR:
col03019
]
AM608_01365
Transcription machinery [BR:
col03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AM608_01365
Messenger RNA biogenesis [BR:
col03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AM608_01365
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
OB_RNB
AAA_22
AAA
Mor
Motif
Other DBs
NCBI-ProteinID:
ALC96398
LinkDB
All DBs
Position
303423..305072
Genome browser
AA seq
549 aa
AA seq
DB search
MLNIVELKSKKLTELQEIAKHLDIPKFRYVNKPELIDLILKNQKKELPNKKEEVQKDNSP
IITTENTTESKKNNRKKKIEIPQKVGSSKQEKTSKTPTVKKASSADESKTYQKKNTTSVV
SNNHQNNATPTKNYSSPVQNGNGNNGNYNQNVNNGNTIVNNENFDKEKKNRYRAPDFEFD
SVVDCEGVLEITSDGYGFLRSSDYNYLASPDDIYVSSSQIRLFGLQTGDTVYGEVRPPKD
GEKYYPLLKVIKINGLDPQVVRDRVLFEHLTPLFPDVKFELAGKGSTVSTRLIDLFAPIG
KGQRGMIVAQPKTGKTMLLKDIANAISKNHPEVYLMVLLIDERPEEVTDMQRSVRGEIIS
STFDKEAAEHVKIANIVLEKAKRLVECGHDVVILLDSITRLARAYNTVQPASGKVLTGGV
DANALHKPKRFFGAARNIENGGSLSIIATALTETGSKMDEVIFEEFKGTGNMELQLDRRI
SNRRIFPAIDLIASSTRRDDLLLDENTLNRTWVLRKYLAEMNPIEAMEFMEKQIKLTRNN
EEFLATMNN
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgcttaacattgtagagttaaaatctaaaaagctaactgagttacaggaaatagcaaaa
catttggatatacctaaatttcggtatgtaaataagcctgaactcatagacctaattcta
aaaaatcaaaaaaaagaactccccaacaaaaaagaagaagttcaaaaagacaattctcct
attattacaactgagaacacaactgaatccaaaaaaaacaatcgtaaaaagaaaatagaa
atacctcaaaaagtaggcagttctaaacaagaaaagacttcaaaaacaccaaccgttaaa
aaggcttcttcggcagatgaatctaaaacgtatcagaagaaaaacactacttctgtggtt
tctaacaatcatcagaataatgctaccccaacaaaaaactacagttcccctgtacaaaat
ggcaatggcaataatggtaattacaatcaaaatgtgaacaatggcaatactattgttaat
aatgagaattttgataaagaaaagaaaaaccgttatcgcgcccccgattttgaatttgac
agcgtggtagattgtgagggggtcttagaaatcacttctgacggttatggttttttgcgt
tcttcggactataactatttggcttcgcctgatgatatttacgtatcttcttcacaaatc
cgactttttggcttgcaaacaggagatactgtatatggagaagtgcgtccgcccaaagat
ggcgaaaagtattatccgctactaaaagttataaagataaacggacttgacccccaagtg
gtgcgcgaccgagtactatttgagcaccttacgcctctttttcctgatgtaaaatttgag
ttggcaggcaaaggctctactgtttctactcgtttgatagacctttttgctcctattggg
aaaggacaacgcggtatgatagtggcacaacctaagacgggtaaaacaatgcttttaaaa
gatattgcgaatgccattagcaaaaatcaccccgaagtttacctaatggtactcttgatt
gatgagcgccctgaggaggtaactgatatgcaacgcagtgtgcgaggagagattatctct
tcgacttttgataaggaagctgccgaacacgtgaaaatagctaatatcgtacttgaaaaa
gcaaaacgattggtagaatgtggtcacgatgtggttatattgttagactctatcactcgt
ttggctcgtgcttataacacagtgcaaccagcttcggggaaagtgcttactggtggggta
gatgctaacgctttacataaacctaaacgctttttcggagcagcacgtaatattgaaaac
ggaggctctctttctatcatcgctacggctcttaccgagacaggttcaaagatggacgag
gtaatttttgaggaatttaaaggaacgggtaatatggagttacaattggatagacgtatc
tcgaaccgtcgtattttcccagctattgacctaatagcttcgtctactcgtagagatgac
ttgttgcttgatgaaaacacgcttaatcgcacttgggtattgcgcaagtatttggcagaa
atgaatccgatagaggcgatggaatttatggaaaagcaaattaagctaacgcgcaataac
gaagagtttttggcaacgatgaacaattag
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