Capnocytophaga sp. oral taxon 323: AM608_02010
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Entry
AM608_02010 CDS
T04076
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
col
Capnocytophaga sp. oral taxon 323
Pathway
col03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
col00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AM608_02010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
col03400
]
AM608_02010
Enzymes [BR:
col01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AM608_02010
DNA repair and recombination proteins [BR:
col03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AM608_02010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
BA_2335-like
DUF3891
Motif
Other DBs
NCBI-ProteinID:
ALC96508
UniProt:
A0A0M4H0W4
LinkDB
All DBs
Position
complement(463428..466757)
Genome browser
AA seq
1109 aa
AA seq
DB search
MKELLQLFAENSTYKSLLTEIKAHHNTVANGLAGASLSLLIANVYTNTKRPLLVLLPDKE
ESAYLLNDLETLVGEQVLFFPDSYRRPYQIEDTDNANVLLRAEVLNQLSNSGQPLIVVSY
PEALFEKVITRKQLEQNTLKISKGDQLTIELLNEVLFSYNFNRTDFVTEPGEFSVRGGIV
DVFSFSNNEPYRIEFFGNEVESIRTFDVETQLSTTQLSTITIIPNVENKEGNEVRQSFLE
YISEQTLLISKETSTFGAKIDKLFTKATDIYEKLTNEVKHSTPDVLYCQSGDLLNQMGRF
QQININLPSSFSKGEKEIVFRTTPQPSFNKQFELLISYLNDKHTEGYQNYILCGSEQQAK
RFHDIFEEMEQKVHYKTLLISLHAGFIDNEHKLNVFTDHQIFERYYKFQLKNGYAKKQAI
TLKELMQLEVGDYVTHIDHGIGKFAGLQKIEVEGKQQEAIKLIYGDRDVLFVSIHALHKI
TKYNGKDGKPPKIYKLGSGAWKALKQKTKTRVKEIAFNLIQLYAKRKESKGYAYSHDSYM
QNELEASFLYEDTPDQSKATADVKADMESPKPMDRLVCGDVGFGKTEVAIRAAFKAVDNG
KQVAVLVPTTVLAFQHFQTFSQRMKDFPVRIDYLNRFRTAKEKKIILEELANGQLDIIIG
THQIVGEKVAYKDLGLLIVDEEQKFGVGVKDKLKTLKENLDVLTLTATPIPRTLQFSLMS
ARDLSVINTPPPNRYPIDSQVVPFSEEIIRDGIRYEIQRGGQVFFMHNRVENIQEVAGMI
QRLLPDARIAIGHGQMDGKKLEETMLAFMNGAYDILVATTIIENGLDVPNANTIFINNAH
NFGLSDLHQMRGRVGRSNKKAFCYFITPPLVAMSDDARKRIEAIAQFSDLGSGLNIAMKD
LEIRGAGDLLGGEQSGFINELGFETYQKILQEAIVELKENEFSELYHTAEEDKTYLTDTQ
IDTDFELLFPDTYVNRVAERLNLYNELSNLPNEEALQQYQRNLTDRFGKLPPQAIDLLNS
VRVKWIATRMGIEKLVMKNGKMTGYFISDQNSPFYQSERFQKVLLFVQRYPNKCRMQEKE
TRNGLRLLLIFEGINTVYQALKVMQLLDA
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagagttattacaattatttgcagaaaatagtacttataaaagtttattaactgaa
attaaagcacatcataataccgttgccaatggtttggcaggggcttctctgtccttactc
atagctaatgtttatactaataccaagcgtccgctattggtactcttgcccgacaaagaa
gaaagtgcctatttgctaaacgacttagagaccttagtaggcgaacaagtactcttcttt
cctgatagctatcgtcgcccgtatcaaattgaagataccgataacgccaacgtgttacta
cgtgctgaagtactcaatcagctgagcaatagtgggcaaccactgatagtagtctcctac
cccgaagcgctcttcgagaaagttatcactcgtaagcaattagagcaaaataccttaaag
attagcaaaggagaccaactaaccattgagctcttgaacgaagtgcttttctcctataat
ttcaatcgcactgattttgtaaccgaacctggcgagttttcagtacgcggggggattgtt
gatgttttttctttctcaaataacgaaccttaccgcattgaattctttggcaatgaagta
gaaagtattcgcactttcgatgtcgaaacacagctctcaacaacacagctttctacgatt
accattatccctaacgtcgaaaacaaagaaggtaatgaggtacgtcagtcatttttagag
tatatcagcgaacagactcttttaatatctaaggaaacatctacttttggagcaaaaatt
gacaagctcttcactaaagctactgacatttacgaaaagctcactaatgaagtaaaacac
agtacacccgatgtgctatattgtcaatcaggagatttattaaaccaaatggggagattt
cagcaaataaatataaatcttccctcatctttctccaaaggcgaaaaagagattgttttc
cgcactacaccacagccctcatttaacaagcaattcgagcttcttatcagttatttaaac
gataaacacactgagggataccaaaactatatcctctgtggtagtgagcaacaagccaaa
cgcttccacgacatctttgaggagatggaacaaaaagtgcattacaaaacactactgatt
tctctacacgcgggctttatagataatgagcacaagctgaatgtctttactgaccatcaa
atatttgagcgttactacaaattccagctgaagaacggatatgctaaaaagcaagcgatt
acgctcaaagagttaatgcaattagaagtaggcgactatgtaacccatatcgaccacggt
attggtaagtttgctggattacagaagatagaggttgaaggcaagcaacaagaggctatc
aaactgatttacggcgaccgcgatgtcctatttgtaagcattcacgccctacataaaatc
actaaatacaacggtaaggacggcaagccacccaagatatacaaattaggttctggagcc
tggaaggcactcaagcagaagacaaaaacaagagtgaaggaaatagccttcaacttgatt
cagttgtatgctaaacgtaaggaatctaaagggtatgcatactctcacgacagctatatg
cagaacgaactggaagcctctttcctatatgaagatacacccgaccaaagcaaagctact
gccgatgtaaaagctgatatggagagcccaaaacctatggacagattggtatgtggtgat
gttgggtttggaaaaaccgaagtagctattcgcgctgccttcaaagcggtagacaacggc
aagcaggtagcggtattggtacctactacggtactcgcttttcagcactttcaaaccttt
agtcagcgtatgaaagacttccctgtgcgcatcgattatctcaaccgttttcgcacagct
aaagaaaagaaaatcatcttagaagaacttgcaaatggtcagttagatatcatcatcgga
actcatcagatagtaggcgaaaaagtagcttataaagatttaggtctactgatagtagac
gaagagcaaaagtttggtgtaggcgtgaaggataagctcaaaacgctcaaagaaaacctt
gatgtgctcaccctcactgctacacctatcccccgaaccttacagttcagcttaatgtca
gcccgcgacctatcagtaatcaatacacctccccctaaccgctaccctatcgattctcag
gtagtacctttcagcgaagagataatacgcgatggtattcgttatgaaattcagcgaggc
ggacaagtgttctttatgcacaaccgtgtagagaatattcaggaagtagcaggtatgatt
caacgcctattacccgatgcacgtatagccattggtcacggacaaatggacggaaaaaaa
ttagaagaaacaatgttagcctttatgaatggtgcttacgatatattagtagctactact
atcattgaaaatggtttagatgtacccaatgctaataccatctttatcaataatgcacat
aatttcggcttatccgatttacaccaaatgcgtggacgtgtaggtagaagtaataaaaaa
gcattttgttacttcatcacccctccgttggtagcgatgagtgatgatgcccgcaagcgt
attgaagctatagctcagttctctgatttaggaagcgggttaaatattgctatgaaggat
ttagaaattcgtggagctggagacctcttaggcggggaacaaagtggatttatcaatgag
ttaggcttcgaaacttatcagaaaatattgcaagaagctatagtagagctcaaagaaaat
gagttctcagaactatatcacactgccgaagaagataaaacttacctcaccgatactcaa
atagacaccgattttgaattgctttttcctgatacctatgtcaatagagtggcagaacgg
ctcaatctttataacgaactgagtaatttacccaatgaggaagctttacagcagtaccaa
cgcaatcttaccgaccgttttggcaaacttcctccccaagctatcgacttgctcaacagc
gtgcgagtgaaatggatagctactcgtatgggaattgaaaagctcgtgatgaaaaacggt
aagatgacaggctattttatctccgaccaaaacagtccattttaccaaagtgagcgtttt
caaaaggtgctactctttgtacaacgttaccctaacaagtgtcgtatgcaagagaaagaa
acccgtaacgggttgcgtttgctccttatttttgaaggaatcaatactgtgtatcaagcc
ttaaaagtaatgcagttattagatgcatag
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