Capnocytophaga sp. oral taxon 323: AM608_05870
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Entry
AM608_05870 CDS
T04076
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
col
Capnocytophaga sp. oral taxon 323
Pathway
col03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
col00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AM608_05870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
col03019
]
AM608_05870
03009 Ribosome biogenesis [BR:
col03009
]
AM608_05870
Enzymes [BR:
col01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AM608_05870
Messenger RNA biogenesis [BR:
col03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AM608_05870
Ribosome biogenesis [BR:
col03009
]
Prokaryotic type
rRNA helicases
AM608_05870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ParB_N
RecG_N
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALC97204
LinkDB
All DBs
Position
1378933..1380687
Genome browser
AA seq
584 aa
AA seq
DB search
MNLFEQLGLDEPILKAISDMGFETPSEIQQKAIPTLLANGADMVALAQTGTGKTAAFGFP
LLQLIDTDSRVTQGLILSPTRELCLQIASELRNYAKYLPKVNVVAVYGGASIEEQARSLK
KGAQIIVATPGRMQDMIRRNFVDISHINYCVLDEADEMLNMGFYEDITAILSHTSQEKST
WLFSATMPNEVAKIARKFMRKPIEITVGTRNQATNTVQHEYYIVSGRHRYQALKRLADAN
PDIFSVVFCRTKRDTQAVAEKLIEDGYNAAALHGDLSQNQRDLVMKSFRARQIQMLVATD
VAARGIDVDDITHVIHYQLPDEIETYNHRSGRTGRAGKSGISMVILPKSEVKKIKTIEKM
IGQPFEQKQLPSGMEICEIQLYHLANNLKNTEVNPAIDDYLPAIYKELQEVNREELIKKI
FSVEFTRFFNYYKNAENLSVENERESRSGGNSDEVRYFINIGERDGYDWKSLKDFLKATL
NLGRDDVFKVDVKNSFSFFNTDADLSDLVMSTFTDFQMDGRFINVELSTKGAGRDRGGRK
RGNDDGRRHGNDESRNRKKGQRESRKQKTAEALQQAFKKKKKRK
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttgaacaattaggtcttgatgaacctatcctcaaagccatcagcgatatg
ggctttgaaactccttctgaaattcagcaaaaagccattcctactcttttggcaaatggt
gctgatatggtagctttagcccaaacaggtactggtaaaacagccgcttttggctttcct
ctcctccaacttatcgatactgatagccgtgtaacccaagggcttatcctttcgcctaca
cgcgaactctgcttgcaaatcgcttctgaactccgcaattatgctaagtacctccctaag
gtgaacgtagtggcggtatatggcggcgcaagtattgaggaacaagcgcgtagcctcaaa
aaaggcgcacaaattatcgtggctactcctgggcgtatgcaagatatgatacgccgtaac
ttcgtagatatcagtcatatcaactattgtgtgctcgacgaagccgacgaaatgctcaat
atgggcttctatgaagatattaccgcaattctatcgcatacctctcaagaaaaaagtact
tggctcttttcggctactatgcctaacgaggtggctaagatagcgcgcaagtttatgcgt
aaacctatcgaaataacagtaggaactcgcaatcaggctactaacaccgtgcaacacgag
tactatatagtgagcggtcgccatagataccaagccctaaaacgcctcgccgatgctaat
cctgatatcttctcggtagtattttgccgaaccaaacgtgatacgcaggcagtagccgaa
aaactcatcgaagacggctacaatgctgctgcccttcacggtgatttgagtcagaatcaa
cgtgatttggtgatgaaatctttccgcgcacgccaaatacaaatgctcgtcgctaccgat
gtagcagcccgcggtattgatgtagacgatatcactcacgtaattcactaccaattgccc
gatgaaatagaaacctacaaccaccgcagtggacgtacaggtcgtgctggtaaatcggga
atttcgatggtaattttgccaaaaagtgaggtgaagaaaataaaaactatcgaaaagatg
atagggcaaccttttgagcagaaacaattgccgtcgggtatggaaatctgtgaaatacag
ctctatcacttggctaacaacctcaaaaatacagaagtaaatcctgccattgacgattat
ttgccagctatctataaagaactgcaagaagtaaatcgtgaagagctcatcaagaaaata
ttctcagtagagtttacgcgtttcttcaattattataaaaatgccgaaaacttatcggta
gagaacgagcgcgaaagtcgcagtgggggtaatagcgatgaagtgcgttatttcatcaac
ataggtgaacgcgatggctacgactggaaatctctcaaagatttcctcaaagcaaccctt
aatttaggtcgtgatgatgttttcaaagtagatgtaaagaacagtttctctttcttcaat
accgatgccgacctctccgatttggtgatgagcacctttaccgacttccaaatggacggt
cgctttatcaatgtagaactctctaccaaaggagctggcagagaccgtggcggacgcaaa
cgcggaaatgatgacggtagaagacacggcaacgatgagagtagaaatcgcaaaaaagga
caaagagaaagtcgcaaacaaaagactgctgaagctctccaacaagcttttaaaaagaag
aaaaaacgtaaataa
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