Capnocytophaga sp. oral taxon 323: AM608_07450
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Entry
AM608_07450 CDS
T04076
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
col
Capnocytophaga sp. oral taxon 323
Pathway
col03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
col00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AM608_07450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
col03019
]
AM608_07450
Messenger RNA biogenesis [BR:
col03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AM608_07450
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
KH-I_KHDC4-BBP
DUF4407
Motif
Other DBs
NCBI-ProteinID:
ALC97485
UniProt:
A0A0M4GI47
LinkDB
All DBs
Position
complement(1723405..1724973)
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AA seq
522 aa
AA seq
DB search
MDSTVIISIAVFIIALFIGFAIAKSLEKKNASKIILNAKNEADVLLKNAKAEAENIKKDK
IFQAKEKFLELKAEHEKTISAKDKKMAEAEKRIRDKESQVSNELAQNKRLKDELEKKTEE
ADFRLQTLDKKQEEIDRLHKSQVQQLEVISGLSAEEAKKLLTDSLRSEAQADAMAYIQNT
IEEAKLTAHQEARKIIINTIQRIGTEEAVDNCVSVFNLESDEVKGRIIGREGRNIRALEA
ATGVEIIVDDTPEAIILSCFDSVRREIARLSLHKLVTDGRIHPARIEEVVEKTTKQIEEE
IVEIGKRTVIDLGIHGLHPELVKCVGRMKYRSSYGQNLLQHSREVAKLCGVMAAELGLNP
KLAKRAGLLHDIGKVPQIESETPHALLGMEWAEKYGEKPEVCNAIGAHHDEIEMTSLLSP
IVQVCDAISGARPGARRQVLDSYIQRLKDLEDAAFTFQGVKKAYAIQAGRELRVIVESER
VTDDKAAELSFNLSQKIQTDMTYPGQVKVTVIRETRAVNIAK
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggatagtacagttattataagtattgcagtttttattattgcccttttcatagggttc
gctatcgccaaatcgctggaaaagaagaacgcctctaaaatcattctcaacgctaagaat
gaagccgacgttcttctgaaaaatgctaaagccgaagctgaaaatatcaaaaaagacaag
atattccaagctaaagagaagttccttgaactaaaagctgaacacgaaaaaacaatctcc
gccaaagataaaaaaatggcagaggctgagaagcgtatacgcgataaagagtcgcaagtg
tccaatgaattggcacaaaataagcgcttaaaagatgagttggaaaagaaaacagaagaa
gccgactttcgcttgcaaactctcgacaaaaaacaagaagaaatagaccgcctacacaaa
agtcaggtacaacaattagaggttatttcaggcttgtctgccgaagaagctaagaaacta
ctcaccgattcattgcgcagtgaagcccaagccgacgcgatggcttatatccaaaatacc
attgaggaagccaagctcactgctcaccaagaagcgcgcaaaatcattatcaacaccatt
cagcgtataggcactgaggaagcagtagacaattgcgtatcggtattcaatctcgagtct
gacgaggtgaaaggtcgtatcatcggtcgtgaaggtcgcaatattcgtgccctcgaagca
gctactggggtcgaaatcattgtagacgatacccccgaagcgattatcctctcttgcttc
gactcggtacgtcgcgaaatcgcacgtctttctttgcacaagctcgtaaccgacgggcgt
attcaccctgcacgtattgaagaagtggttgaaaaaactaccaaacaaatagaagaagaa
attgtagaaataggtaaacgcaccgtaattgacctcggtatccacggattgcaccccgag
ttagtaaaatgtgtaggacgtatgaaataccgttcgtcatatgggcagaacctcttgcaa
cactcacgcgaggtagctaagctttgcggagtaatggcagccgagttaggcttgaaccct
aaacttgccaaacgtgccggactcttgcacgacatcggtaaagtaccgcagatagaaagt
gagactcctcacgcactcctcggtatggaatgggcagagaaatacggcgaaaaacccgaa
gtgtgcaatgctatcggggcacaccacgacgagattgagatgacctccttgctttcgcct
attgtacaagtatgcgatgctattagtggagcacgtcccggagcacgtcgccaagtactc
gattcgtatatacaacgtctcaaagacctcgaagatgctgctttcactttccaaggtgtg
aagaaagcctatgcaatccaagcaggtcgtgagttacgtgtaatcgtagaaagcgaaaga
gtaaccgacgataaagccgcagaactatcattcaacttatcgcaaaaaatccaaaccgat
atgacctacccaggtcaagtaaaagtaacggtaatacgtgaaactcgtgctgtgaatatc
gcgaagtaa
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