Colwellia sp. Arc7-D: DBO93_00185
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Entry
DBO93_00185 CDS
T05422
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cola
Colwellia sp. Arc7-D
Pathway
cola03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cola00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DBO93_00185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cola03019
]
DBO93_00185
Enzymes [BR:
cola01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DBO93_00185
Messenger RNA biogenesis [BR:
cola03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DBO93_00185
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_22
HI1480
DUF8086
P-loop_SecA
CMS1
Cas3-like_C_2
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AWB56142
LinkDB
All DBs
Position
39583..40944
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AA seq
453 aa
AA seq
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MSFTELGLSAPIQKAIAEKGYDTPSPIQAQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL
ELLSRGDKARANQARTLIITPTRELAAQIAENVEMYGKHLPLKSAVVFGGVKINPQMQRL
REGVDILVATPGRLLDLYNQNAVRFNQLEILVLDEADRMLDMGFLRDIKKILSLLPKTRQ
TLLFSATFSPDIRELAKRMVNDPVEISISPKNTTAERVEQLIYSVDKNRKSALLTHLILE
NDWQQVIVFMKTKHGANKLTKQLDAAGIQAAAIHGNKSQGARTKALAQFKEGKISVLVAT
DIAARGIDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSSGHAVSLVCADEIDLLNDVEH
VIQTHIPREIVPGFEPVHALPESRNLRALKPKKPRKFKSEGSEHKDGQRSGDNARGNKPT
GKNRRHIGNSSASNPYGNSESKSGSRRRINPSK
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgagttttaccgagttaggtttatctgccccaatacaaaaagctattgctgagaaaggt
tatgatacaccatcacctatacaagctcaggcaatacctgctgtgcttgctggcaaagat
gttatggctgcagcacaaactggcacaggtaaaacagcaggcttcacattacctattctt
gaattactatctcgtggtgataaagcccgtgctaaccaagcccgaactcttattattacc
cctactcgtgagctagctgcacaaatagctgaaaatgtagaaatgtacggtaagcatttg
ccattgaaatctgcggtagtgtttggtggtgttaaaattaatcctcaaatgcagcgttta
cgtgaaggcgttgatattttagttgctacgccgggccgactattagatctatataatcaa
aatgctgttcgctttaatcaattagaaattttagtacttgatgaagctgacagaatgtta
gatatgggttttcttcgtgatattaagaaaattttatcattgctaccaaaaacgcgccaa
acgctacttttctcagcaacgttttctcctgatatccgtgaacttgcaaaacgcatggtt
aatgaccctgtagaaatttcaattagcccaaaaaacactacagctgaaagagttgaacaa
ttgatttactcagttgataaaaatagaaaatcagccttacttacacacttaattctagaa
aatgactggcaacaagttatcgtgtttatgaaaactaaacatggtgcaaataaattaact
aaacagctagatgctgcaggtattcaagccgccgctattcatggtaataaaagccaaggc
gcaagaactaaagcgttagcacaatttaaagaaggcaaaattagtgtcttagtggcaact
gatattgctgctcgcggtatcgatattgaccaattaccacaagtcgtaaattttgagttg
cctaatgtgcctgaagattacgttcaccgaattggtcgtactggtcgagcaggttctagt
ggtcatgccgtatcattagtctgtgctgatgaaatagatttactgaatgacgttgagcac
gtaatacaaacacatattccaagagaaattgtgccaggctttgagccagtacatgctttg
cctgaatctcgtaatttacgcgctttaaaacctaaaaagccaagaaagtttaaatctgaa
ggttcggaacataaagatggtcaacgttctggtgataatgcacgtggtaataaacctacg
ggtaaaaaccgacgtcatattggcaatagctcagcaagtaacccttatggcaatagcgaa
agtaaaagtggcagtcgtcgtagaattaacccgagtaagtaa
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