Colwellia sp. Arc7-D: DBO93_00335
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Entry
DBO93_00335 CDS
T05422
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
cola
Colwellia sp. Arc7-D
Pathway
cola03030
DNA replication
cola03410
Base excision repair
cola03420
Nucleotide excision repair
cola03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DBO93_00335
03410 Base excision repair
DBO93_00335
03420 Nucleotide excision repair
DBO93_00335
03440 Homologous recombination
DBO93_00335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cola03032
]
DBO93_00335
03400 DNA repair and recombination proteins [BR:
cola03400
]
DBO93_00335
Enzymes [BR:
cola01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DBO93_00335
DNA replication proteins [BR:
cola03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DBO93_00335
DNA repair and recombination proteins [BR:
cola03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
DBO93_00335
NER (nucleotide excision repair)
GGR (global genome repair) factors
DBO93_00335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
AWB59393
LinkDB
All DBs
Position
80552..83296
Genome browser
AA seq
914 aa
AA seq
DB search
MPTSDQSPLILVDGSSYLFRAYHVPYLQALSTSDGQPTGAITGVLNMFRSLKKDYPNGNV
IAIFDAKGKTFRNDMYPEYKANRPPMPDDLRTQIAPIHDIITAMGLPLLVVDGVEADDVI
GTLSHQATALGIETVISTGDKDMAQLVNPHVRLINTMTNVEMDEAGVTEKFGVRPDQIID
YLALMGDKVDNIPGVEKCGPKTAVKWLTAYPSLKEVMEHADEVKGKVGENLRTALEFLPL
SYELATIKLDVVLEQNVAELKPSAPDTETLRTLYKKYELKRLLADLDGSDSKVESDTTAA
STVVADLPAAVDSEYDIILDKASFTTWLEKLKTAELFAFDTETTSVDYMKAKLVGLSICI
EVGKAAYVPLTHDYIDAPEQLPLDWVLEQLKPLLESETVFKVGQNLKYDANVLSHYNITM
QGIQFDTMLESYCFNSVATRHNMDALADKYLGYQTVHFEDIAGKGAKQLTFNQIDIDKAG
HYAAEDADITMRLHEAIYPQLANIKSQLSVFTDIEMPLLPVLARMEQHGVLIDCDMLAEQ
SQSIGVRLAELEIEAHNLAGKSFNLSSPKQLQVILFDELKIPVIKKTPKGAPSTAEEVLQ
ELALDYPLPKVILENRGLSKLKSTYTDKLPLLVGAKTNRVHTSYHQAVTATGRLSSTDPN
LQNIPIRSEEGRKIRLAFIAPPEHKIVAIDYSQIELRIMAHLSDDPGLVKAFSEGKDVHK
ATAAEIFAVPLDEVTSDQRRSAKAVNFGLIYGMSAFGLAKQLNVPRHTAQAYMDKYFERY
PNVSQYMEDTRQKATENGYVETLFGRRLYLPDINAKNGMRKKAAERAAINAPMQGTAADI
IKKAMLDVDAWIEEKNDPRIKMTMQVHDELIFEIHQDIVEATTATLVEIMNNAITMSVPL
IAEAGMGDNWEQAH
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgccaacttctgaccaatcaccgcttattttagtcgatggttcatcttatttatttcgc
gcatatcacgtgccatatttgcaagctttatcaacatcagatgggcaacctacaggagcc
attacgggtgtcttgaatatgttcagaagtttgaaaaaagattatcccaacggtaatgtt
attgcgatatttgacgcgaaaggtaaaacgtttcgtaatgacatgtatccagaatacaaa
gctaatcgtccgccaatgccagatgaccttcgcacgcaaattgcgccaatacatgacatc
attaccgctatgggtttgccactattagttgtcgatggcgttgaagctgacgatgttatt
ggtacgctgtctcatcaagcaacggccttaggtattgaaacggtaatttctaccggtgat
aaagatatggcgcaattagtaaacccacatgtgcgcttaataaataccatgactaatgta
gaaatggatgaagccggcgttactgaaaaatttggtgttcgtcctgatcaaattatcgac
taccttgccttaatgggcgataaagttgacaacattcctggtgttgaaaaatgtggtcct
aaaactgccgtaaaatggttaactgcatacccgagcttaaaagaagtgatggaacatgcg
gatgaagtaaaaggcaaagtgggtgagaatttacgtaccgcgttggagtttttaccatta
tcttatgagcttgccaccatcaaacttgacgtcgtacttgagcaaaacgttgctgaactc
aaaccaagcgcaccagataccgaaacattaagaacattatataagaaatacgaacttaag
cgtttgttagctgacttagatggtagtgatagcaaagtagaatcagacactactgcagcg
agcactgtagttgctgatttaccagccgccgttgatagcgaatatgacattattctagat
aaagctagctttacgacttggcttgaaaagttaaaaaccgctgagctatttgcttttgac
actgagaccaccagcgttgattacatgaaagctaaactggtaggtttatcaatctgtatc
gaagtaggtaaagcagcatatgtacctttaacgcatgactatattgatgcgccagagcag
ttaccgctagattgggtgttagaacagcttaagcctttattagaaagtgaaaccgtattt
aaagtcgggcaaaatttaaaatacgatgccaatgtattgtcacattacaacattacaatg
caaggtattcaatttgataccatgctcgagtcatattgttttaatagtgtagcaacacga
cataacatggacgctttagcggataagtatttaggttatcaaactgttcattttgaagat
atagcaggcaagggcgctaaacagctgacctttaatcaaattgatattgataaagctggg
cattatgccgctgaagatgccgatattactatgcgtttgcacgaagctatttatccacaa
ttagcaaacataaaatcacaattatccgtttttaccgatattgaaatgccactattaccg
gtacttgctcgcatggagcagcatggcgtgttaattgattgcgatatgctagcagagcaa
agccaatctataggtgtgcgtttagctgagttagaaatagaagcacataacttggctggt
aaaagttttaacttaagttctcctaagcagctacaagttattttatttgatgagcttaaa
attccagttattaagaaaacacctaaaggcgcaccttcaaccgcagaagaagtgctacaa
gaattagcattagattacccattacctaaagtgattttagaaaacagagggttaagtaaa
ttaaagtctacttatactgataaattaccgttattggtaggcgctaaaaccaatcgtgtt
catacttcttatcatcaagcggttactgcgactgggcgattatcttcaactgatccaaac
ctacaaaacattccaattagaagtgaagaaggtcgcaaaattcgtctagcttttattgct
ccgcctgagcataaaattgtcgctatcgattactcgcaaatcgagttacgcataatggcg
cacttatctgatgatccgggtttagttaaagcgttttcagaaggtaaagacgtacataaa
gcgacagcagcggagatatttgctgtgccactagatgaagtgactagtgatcaacgtcga
agcgcgaaagcggttaactttggtttgatttatggcatgtcagcatttggtttagcaaaa
caattaaacgttcctcgccatactgcgcaagcttatatggacaaatactttgagcgttat
cccaatgtttctcaatatatggaagatacccgtcaaaaagcgacagaaaatggctatgta
gaaaccttatttggtcgccgactttatttacctgatattaatgcaaaaaatggtatgcgt
aaaaaagcagctgaacgtgccgctattaatgcgccaatgcagggaactgctgctgatatt
attaaaaaagcgatgttagatgttgatgcttggatagaagagaaaaacgacccgagaatt
aaaatgaccatgcaagtgcatgatgaattaatttttgagattcaccaagacattgttgaa
gcaacaaccgctactttagtggaaataatgaataacgctatcaccatgagtgtcccgtta
atcgcagaagcgggtatgggcgataactgggagcaagcacattaa
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