Colwellia sp. Arc7-D: DBO93_04035
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Entry
DBO93_04035 CDS
T05422
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cola
Colwellia sp. Arc7-D
Pathway
cola03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cola00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DBO93_04035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cola03019
]
DBO93_04035
03009 Ribosome biogenesis [BR:
cola03009
]
DBO93_04035
Enzymes [BR:
cola01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DBO93_04035
Messenger RNA biogenesis [BR:
cola03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DBO93_04035
Ribosome biogenesis [BR:
cola03009
]
Prokaryotic type
rRNA helicases
DBO93_04035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AWB59449
LinkDB
All DBs
Position
925374..927182
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AA seq
602 aa
AA seq
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MTDLNNASVGFDALGLPENLVSAVKALGFESSTPIQAQTIPPLLQGKDVLGEAQTGTGKT
AAFGLPALAKIDVTLRKPQLMVLAPTRELAIQVAEAIETFAKDMKGLKVATLYGGQSYQP
QFQQLERGAQVVVGTPGRLMDHLRRKSLKLDNLSFCVLDEADEMLNMGFLEDIEWILEHL
PKETQMALFSATMPPQIRKVANRFLKNPEHIKVAAVKKEKANITQYAWKVSGINKMTALE
RIAETVEYDAMLIFVRTRNDTIDVAEKLERAGYASVALNGDMNQAQRERTVDQLKSGVSS
ILVATDVVARGLDIPRLSLVINYDLPGDNEAYVHRIGRTGRAGRSGTAISFVRPREMYSL
RHYERLTSGTIAMYDLPNIQEIGKARIERTCNELASIVADKELTAMREIIETMASESELS
MTDLAAALLYQKQLKQPLQPKEDPKPRRDARESNGRNDARDTRGGRNDSRGGRNDARGGR
NESRGDNRNENRAERAPRKAKVARSDVDWQTYRLEVGKEHGARPGDIVGAIANEISLDSS
YIGAINLHEKHSFVQLPKGMPEKSFTQLKRVQVRRQALAITVSDTQPAAERPSRPRKEQR
TN
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcttaacaatgcctctgtaggctttgacgcccttggtttgcctgaaaactta
gtatctgctgtaaaagcactaggttttgaatcatctacgccaatccaagcgcaaacaatt
ccacctttacttcaaggtaaagacgttcttggtgaagcacaaacaggtacaggtaaaact
gctgcctttggtttgcctgcactagcaaaaattgatgtgacgcttcgtaagccacaatta
atggtgctagcgccaacacgtgaattagctattcaagtagcagaagcgattgaaactttt
gctaaagacatgaaaggcttaaaagttgctaccttatacggtggtcaatcttaccaacca
caatttcaacaactagaacgtggtgcacaagttgttgttggtacacctggtcgtttaatg
gatcacttacgtcgtaagagccttaaattagacaacttatcattttgtgtgcttgatgaa
gctgatgaaatgttaaacatgggctttttagaagatattgagtggatccttgagcatctg
cctaaagaaacacaaatggcgttgttctctgcaaccatgcctccacaaattcgcaaagta
gcgaatcgctttttgaaaaatcctgagcacattaaagttgctgcagtgaaaaaagaaaaa
gccaatattacacaatacgcttggaaagttagcggtattaacaaaatgacagctttagag
cgtattgctgaaactgttgaatatgatgcaatgctaatcttcgttcgtactcgtaatgac
acgattgacgttgctgagaaattagaacgtgcaggttatgcttctgttgccttgaacggt
gatatgaaccaagcacaacgtgaacgtactgttgaccaacttaaatcaggtgtttcatca
attcttgtagcgactgatgttgttgctcgtggtcttgatattccgcgtctttcattagtt
attaactatgatttaccgggtgacaacgaagcttacgttcaccgtataggccgtacaggc
cgtgctggtcgtagtggtacagcgatttcatttgttcgtccacgtgaaatgtattctttg
cgtcattatgagcgtttaacctctggtacgattgcaatgtacgacttaccaaatattcaa
gaaattggtaaagcccgtattgagcgtacttgtaatgagttagcgtctattgttgctgat
aaagaattaacagcgatgcgtgaaattattgaaacaatggctagtgagtcagagctttca
atgacagatttagccgcagcgttactttatcaaaaacagttaaagcaacctttacaaccg
aaagaagatcctaagcctcgtcgtgatgcgcgtgaaagtaatggccgcaatgatgctcgt
gatactcgtggtggtcgtaacgatagccgcggtggtcgcaatgatgctcgcggaggtcgc
aatgaatctcgtggtgataaccgtaatgagaaccgtgcagagcgcgctcctcgtaaagct
aaagttgcccgttcagatgttgattggcagacttaccgcctagaagtaggtaaagagcat
ggtgcacgtcctggtgatatcgttggcgcaatcgctaatgaaatttcattagacagcagc
tacattggtgctatcaacttacatgaaaaacatagctttgtgcagttgcctaaaggtatg
cctgagaagtcttttacacagttaaagcgtgttcaagttcgtcgtcaagcacttgctatt
acagtgtcagatacgcagccagcagctgagcgtccatctcgtccacgtaaagagcaacgc
actaactaa
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