Colwellia sp. Arc7-D: DBO93_05860
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Entry
DBO93_05860 CDS
T05422
Name
(GenBank) hypothetical protein
KO
K03546
DNA repair protein SbcC/Rad50
Organism
cola
Colwellia sp. Arc7-D
Brite
KEGG Orthology (KO) [BR:
cola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cola03400
]
DBO93_05860
DNA repair and recombination proteins [BR:
cola03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DBO93_05860
Archaeal homologous recombinant proteins
DBO93_05860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
AAA_29
AAA_23
ABC_tran
SMC_N
GTP_EFTU
Motif
Other DBs
NCBI-ProteinID:
AWB57126
LinkDB
All DBs
Position
1346271..1350215
Genome browser
AA seq
1314 aa
AA seq
DB search
MKILSLRFENINSLKGHWKIDFTQSPFDTSALFAIVGPTGAGKTTILDAMCLALYHQTPR
LTISDKQNQLMTRHTTSCLAEVEFEVKGQAYRAFWSQRRAKNSVEGNLQKPTAELAKITP
NGDVNLDDTDEKSAGEADVIATKVSDIRNEIARITGLDFSRFRKSMMLSQGEFAAFLNAP
ANERADLLEELTGSEIYGDISKAVFEQHKDASNELKLLQAKNSGLQLLTPEQQQVIDNEL
EKVSAQQQPFEAQITHWQHIRHWLVNVQQANKQKLHAEQQEQSAQQKHSEHETQLRALAL
SEPAENLRAEYQQLNHVNQQLTELNEQAKVLEQDAKQSADQVGVAEQALAEFSLAHDGFV
KEQQATEQLIVEQVLPLDSKISQLTEQQSQQVSRLTSASEVAQQAKKEAEQLLSQQQIQQ
EKIEQAKAFIGQQEHLAPLPEHLPLWRNMHAQMVNEKQLSFELLAQDVTLQKQAEALTHT
MAEDEQKFATLDTEFKQQQVLLASKESAISELLAQHQCESEQALSQQLHNMQSMVTEQAQ
VMQNARRYQTLATELKDIDKTLNDDNQQLASIVEQLQPLRSQYKQQKVQLTDVQLIVEQQ
KTIMSLSEHRANLKTDQACPLCGSQQHPAIGDYQALSANNGDENEQQSRLKQLTLALDQL
EQQGKTLSSAQDRLKEKLNFVGENQAVKQQEQQYLAQQWLTQRTLLALDVELSEFAQIEA
NIQARQQHFEQLNNANSQLQQLKQAQQQQVTLLTGQEKQLLTLSNQSQNQTLQLKQFRQQ
AEQNKQSLMLKLTQISQEWQKLSTFMQASHLTLPDCFTVFNQVDIDATQTDAAQDKFNAL
VQLQQAWINELEQQSSAYQTALSAVSIDNEQLQQLQQQRAIVDNNVEQLNTSEQSLKTEL
NALEQQLTEEKIKRHSLFGEQNTQQVRQQLKQQQQAQEQALLGHQNVLNEQKNLQQNVAG
KLHGNVEAINRLTPQQQSANQVWQTQLADSEFATEADFKAALLTLEQRKALKEIQQTIEQ
QVQQAKAQLQQAQQQLLQLEQDKALLQEQSHQLVDALQSNESSAAESHDEILKDLLFTQR
VEINDQLDIATFDNKAVICAQILKQLQVRQGQLSQQVSQDKQQREEQKSVLANIVNQQAE
LDDLSHLNGLIGAKDGAKFRRFAQGLTLSHLVYLANQQLNRLHGRYQLQRQQSDNLALEV
LDTWQADSVRDTKTLSGGESFLVSLALALALSDLVSAKTSIDSLFLDEGFGTLDNDTLEI
ALSALDSLNASGKMIGVISHVDALKKRIDVQIEVKKHSGLGVSELADCYRYLDN
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatattatcactacgctttgaaaacattaattccctaaaaggtcattggaaaata
gattttacccaatcgcctttcgacaccagtgctttgtttgccattgttggcccgaccggt
gcgggtaaaacgacaatactcgacgccatgtgtttggcgctctaccatcaaacaccacgc
ttaacgatatcagacaagcaaaaccaattaatgacccgccatactacgagctgtttggct
gaagttgaatttgaggtgaaaggtcaagcgtatcgtgctttttggagtcaacgtcgagct
aaaaacagtgttgaaggtaacttacaaaaaccgaccgcagaattagcgaaaataacgcca
aacggtgacgttaaccttgacgatactgatgaaaaatccgcaggagaagcggacgttatt
gctactaaagtttcagatattcgaaatgaaattgctcgcatcactggcttagacttttct
cgttttagaaagtcgatgatgttatcgcaaggggagtttgccgcttttttaaatgctccg
gcgaatgaacgcgccgatttattagaagagctgaccggtagtgaaatttatggtgacatt
tctaaagcggtgtttgaacagcacaaagacgcgagtaatgaattaaagctactacaagcg
aaaaactcaggcctgcagttattaacgcctgagcagcaacaagttattgataacgaacta
gaaaaagttagcgcacaacaacaaccatttgaagcgcagataacgcattggcagcatatt
cgacattggttagtgaatgttcagcaagccaataagcaaaaattacacgccgagcaacaa
gaacaaagcgcgcagcaaaagcatagcgagcatgagactcaattacgcgctttagcattg
tcagagcctgcggaaaacttacgcgctgaatatcagcaactcaatcatgtgaatcaacaa
cttactgagcttaatgagcaggctaaagttcttgagcaagatgcgaaacaaagtgcagat
caagttggtgtcgcagagcaagcactagccgagttttcattagcccatgatgggtttgtc
aaagagcaacaagcgacagaacaattaattgttgaacaagtactgccattagatagcaaa
atctctcagctcacggagcaacaaagtcaacaggttagtcgcttaacaagcgcgagtgaa
gtagcgcaacaagcaaaaaaagaagccgagcaactgttgagccaacagcaaattcagcaa
gagaaaatagagcaagccaaagcatttatcgggcagcaagagcacttggcaccattgcct
gagcatttaccattatggcgcaatatgcatgcgcaaatggttaatgagaaacaattgagt
tttgagttactggcgcaagatgtaacgctacaaaagcaagctgaagcattaactcatacg
atggctgaagatgaacaaaaatttgccacgcttgatactgaatttaagcagcagcaagta
ctgctcgcttcgaaagaaagtgcgataagtgagttattagcacaacaccaatgtgaaagt
gaacaggcgcttagtcagcagttgcataatatgcagtcgatggttactgaacaagcgcaa
gttatgcaaaatgccagacgttaccaaacgttagcaacagaattaaaagatattgataaa
acgctgaatgacgataatcagcaattagctagtatagtcgagcaattacagccattaaga
tcacaatataaacagcaaaaagtgcaattgactgatgtgcaattaattgttgaacaacaa
aaaacgattatgtcgttaagtgaacatcgagcaaacttaaaaacggaccaagcttgtccg
ttatgcggctcacagcaacatcctgctattggtgattatcaggcgcttagtgctaacaac
ggtgatgaaaatgagcaacaaagccgattaaagcaattaaccttggctttagatcagctt
gaacagcaagggaaaaccttgtcgtctgcgcaagaccgattaaaagaaaagcttaatttt
gttggcgaaaaccaagccgtaaaacaacaagaacaacaatatttagcgcagcaatggctt
acacaacgcacgttattagcgcttgatgttgagctatctgaatttgcgcaaatagaagca
aatattcaggctcgtcaacaacattttgagcaactcaataatgccaatagccaactacag
caattaaagcaggctcagcaacagcaagtaacattactgaccgggcaagaaaaacagctg
ttaactttgtctaatcagagccaaaatcaaacgttacaacttaagcaatttagacaacaa
gctgagcaaaacaagcaaagcctgatgcttaaattaacgcaaatatcgcaagagtggcaa
aagttaagcacgtttatgcaagcgagtcacctgactctgcctgattgttttactgttttt
aatcaagtagatatagatgcgacacaaactgatgctgcacaagataaatttaatgcttta
gtacaactgcagcaagcatggataaatgaacttgagcagcaaagtagcgcttatcaaacg
gcattaagcgccgttagcattgataacgaacaactacaacaattgcagcaacaacgggca
atagtcgataacaacgttgagcagttaaatacttctgagcaaagcttaaaaacagagttg
aatgcgttagaacagcaacttactgaagaaaaaattaaacgtcatagcttatttggtgaa
caaaatactcagcaagtgcgtcaacaattaaagcaacagcaacaagcgcaagaacaagca
ttgcttgggcatcaaaatgtacttaacgagcagaaaaacttacaacaaaatgtcgcgggt
aaattacatggcaatgttgaggcgatcaatcgcttaacgccgcagcaacagtcagctaat
caagtttggcaaacgcagctcgctgacagtgagttcgcaaccgaagctgattttaaagcc
gcgctattgaccttagagcaacgtaaagctttaaaagaaatacaacaaacaattgaacag
caagtacagcaagccaaggcgcaattgcagcaagcacaacaacaattattacaacttgag
caagataaagcgctgctgcaagaacaaagtcatcaattggttgatgcgttgcaaagtaat
gagagcagtgcagcagagagtcatgatgaaatactgaaagatttattgttcacacagcga
gttgagataaatgatcagctagatattgccacttttgataataaagctgtgatttgtgca
caaatattaaaacaattacaagttcgtcaagggcagttaagtcagcaagtaagccaagat
aaacagcaacgtgaagagcaaaaaagcgtactcgcaaacattgttaatcaacaagctgaa
ctagacgatctttcgcatcttaatggcttaattggcgctaaagatggagctaagtttaga
cgcttcgcgcaaggcttaacgttgtcgcatttagtctatctagccaaccaacaacttaat
cgtttacacggccgctatcaattacagcgtcaacagtcagataatttagcgttagaagta
cttgatacttggcaagcggatagtgtgcgagacactaaaaccttatcaggtggtgaaagc
tttttagtcagtttagcgctcgctttagcgttatctgatttagtcagtgctaaaaccagt
attgattcactatttttggatgaaggttttggcactttagataacgacaccctagaaatt
gccttatcagcccttgattcattaaatgctagtggcaaaatgattggcgtgatcagtcat
gttgatgccttgaaaaagcgtattgatgtgcaaattgaagtgaaaaaacacagtggttta
ggggtcagtgaattagctgattgttatcgctatctcgacaattaa
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integrated database retrieval system
