Colwellia sp. Arc7-D: DBO93_06250
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Entry
DBO93_06250 CDS
T05422
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
cola
Colwellia sp. Arc7-D
Pathway
cola03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DBO93_06250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cola03400
]
DBO93_06250
DNA repair and recombination proteins [BR:
cola03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DBO93_06250
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DBO93_06250
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
AAA_22
DUF87
Motif
Other DBs
NCBI-ProteinID:
AWB57184
LinkDB
All DBs
Position
1430435..1432435
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AA seq
666 aa
AA seq
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MKALKIHSDYTPSGDQPTAIAKLLDGIDSGLAHQTLLGVTGSGKTYTIANVIEKLNRPTM
MLAPNKTLAAQLYGEMKDFFPDNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNEHIEQ
MRLSATKSLLERKDVIIIASVSAIYGLGDPDSYLKMMLHVSVGDIINQRDILRRLAELQY
TRNDVAFQRATYRVRGDVIDVFPAESDRMALRIELFDEEIERISIFDPLTGEVERTVARV
TVYPKTHYATPREKILAAVDKIKIELKDRAAQLKENNKLVEEQRIVQRTQFDIEMMTELG
YCSGIENYSRYLSGRGPGEAPPTLFDYLPSDGLLIIDESHVTVPQIGAMYKGDRSRKENL
VEYGFRLPSALDNRPMKFEEFEALSPQTIYVSATPSNYELEKSAGEIAEQVVRPTGLLDP
QIEVRPVDTQVDDLLSEIRKRVKIDERVLATTLTKRMAEDLTDYLDEHQIKARYLHSDVD
TVERVEIIRDFRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGR
AARNINGRAILYAAKITGSMRKAIDETDRRRAKQHQYNLDNNITPRGVRRNISDVMDLDG
GKTRAAAALKAAEPASEYETLTTKQIDVKVQELETQMFNHAQNLEFELAASVRDKIKQLR
DLQLVT
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgctaaaaatacattcagattatacccctagcggcgaccaaccaacggcgata
gcaaaattgcttgatggtattgactctgggttagcgcatcaaacgttattgggcgtaacg
ggctcaggtaaaacttataccattgctaatgtaattgaaaaactcaatcgtccaaccatg
atgttagcaccaaacaaaaccttagcagcgcaactatacggagaaatgaaagactttttc
cctgataatgcggttgagtattttgtttcgtattatgactactatcagccagaagcctat
gtgcctacaactgacacgtttattgaaaaagatgcctcggtaaatgaacatatcgagcaa
atgcgcttgtcggcgactaagtcactgttagagcgcaaagacgttattatcatcgcctca
gtgtctgccatttatggtttgggtgaccctgactcttatttaaaaatgatgttgcatgta
agtgtgggcgacattattaatcagcgcgacatattaagacgcttagctgagctgcaatac
acccgaaatgacgtagcgtttcagcgtgcaacgtatcgcgtacgtggtgatgtaattgat
gtttttcctgctgagtcagaccgcatggcgctgcgcattgagttattcgatgaagaaatt
gaacgcattagcatatttgaccccctaaccggcgaagttgagcgtaccgttgctcgtgtt
accgtttacccaaaaacacattatgctaccccacgtgaaaaaatattagccgctgttgat
aaaatcaaaattgaattaaaagacagagcagctcagttaaaagaaaacaataaactcgtt
gaagagcagcgaatagtgcaacgaactcagttcgatattgaaatgatgacagagcttggc
tattgctcaggcatagaaaactattctcgttatttgtctggtcgtgggcctggagaagcg
ccgccaacattatttgattacctgcccagcgatggcttattaattattgatgaatcgcat
gttaccgtgccgcaaattggcgctatgtacaaaggtgaccgttcacgtaaagaaaacctt
gttgaatatggtttcagattaccttcagcgcttgataaccgcccaatgaaatttgaagag
tttgaagcattatcgccacaaactatttatgtttctgcaacaccaagtaattatgaactg
gaaaaatctgccggtgaaattgctgagcaagtagtgcgcccaacgggcttacttgatcca
caaatagaagtgcgccccgttgatacacaagttgatgatctactttctgaaattcgcaaa
cgcgtaaaaattgatgaaagggtattagccaccacattaactaaacgtatggcggaagat
ttaaccgattacttagacgagcatcaaataaaggcgcgttacttacattctgatgtagac
accgttgaacgagtagaaataattcgagattttcgtttaggtaagtttgacgttttagtg
ggtattaacttacttcgtgaagggttagacatgccagaagtatcgcttgttgccattctt
gatgctgataaagagggctttttgcgctcagagcgttcactcatacaaaccatcggccga
gcggcacgtaatataaacggtagagccattttatatgccgcaaaaattactggttcaatg
cgaaaagctattgacgaaactgacagacgccgtgccaaacagcatcaatacaaccttgat
aacaatataactccacgtggagtaagacgtaatatttcagatgttatggatcttgatggt
ggaaaaactcgcgcggcagcagcattaaaagcggcagagccagcgtcagaatatgaaacc
ttaaccactaaacagattgatgtgaaagtgcaggaactagaaacgcaaatgtttaatcat
gcgcaaaatctagagtttgaattggccgcgtcagtacgagataaaatcaaacaattacgt
gatttacagctagtaacctaa
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