Colwellia sp. Arc7-D: DBO93_07620
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Entry
DBO93_07620 CDS
T05422
Name
(GenBank) hypothetical protein
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cola
Colwellia sp. Arc7-D
Pathway
cola03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DBO93_07620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cola03400
]
DBO93_07620
Enzymes [BR:
cola01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DBO93_07620
DNA repair and recombination proteins [BR:
cola03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DBO93_07620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_30
AAA_19
UvrD_C_2
HHH_RecD2
Viral_helicase1
SH3_13
OB_YrrC
PIF1
AAA_11
PhoH
UvrD-helicase
SLFN-g3_helicase
HHH_5
AAA_22
AAA_16
TraI_hel_assoc_N
Motif
Other DBs
NCBI-ProteinID:
AWB57428
LinkDB
All DBs
Position
complement(1751375..1753510)
Genome browser
AA seq
711 aa
AA seq
DB search
MKSSTGTVSKIVFEYKNKQVIVLNTKQDSIQVVITNANLYVEKNEHIHVRGRLIKHAIWG
EQIHADEIDCTPVTHELLANFLMTGVGIGPAIAKRLMSHFPDELLILIESDNIDVLSSIP
RISRSVATVICNNWRKQSGKVQLLEFMDSVLQNTPVSSRKRLRQVAKKAYSFYGEDTVKK
LQDDPYRVWAFSTFALAERFATSMKIPKNDSRRLICAVEEILFRQLKKGSTQVAPLDFAD
ALTKLVGTPELMFDALKAAVVAGTKENPRIVVSESSCPKNMPDNERLYHRKFALPGTTIM
ENYVTQQLRERLNNNILPIVISDDVLDNYVLQGHKLSYEQKNAVRMILTNAVNVVSGGAG
TGKTSVLFCANDLIKQSGNDVLQVALSGKASQRLIQQTEDDAFTIAGLLNEIEKNDSFLD
RYQTPVVHIDEASMVDLQSMYRILTVFENRALRLVFIGDWAQLAPVGIGLIYHKLVKSDV
VPRVELTINFRSNVGIVDAAEKIKKGIVPQDNDNVQIIEYESSEELQNLLQRQYYTNTYN
DNEAHIIAARKITVSESNTALHNLLSKGHKIIKVAPQFRIGDKVIYKQNNKDLGLVNGST
GTITGQGPETMHVTFSIEGAKELMLEQIQNNSKGIYMLQHAYAMTCHSSQGSEFNVAIVV
VEDFSLVERSWLYTAITRAKDKVVLLAQKGAIQNVLDRGFRFENISVGFDL
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagttcaacaggtacggtcagcaagattgtttttgaatataaaaataagcaagtc
attgtgttgaataccaagcaagattcgattcaagtggtaattacaaatgctaatttgtac
gttgaaaaaaatgaacatatccatgtacgaggaagactgataaaacatgccatttggggg
gaacaaatacatgccgatgagattgattgtactccagtgacccatgaactacttgccaat
tttttaatgacaggtgttggaattggtcctgcaattgctaagcgcctgatgagtcatttt
cctgatgaactactcattttaatagagtctgataatattgatgtactgtcctctatacct
agaatttcaagatcagttgcaacagtaatttgcaataattggcgtaaacaatcaggtaaa
gttcagttgctcgaatttatggattcggtgttacaaaataccccagtctcttcacggaag
cggttgaggcaagtggctaaaaaagcatatagcttttatggtgaagataccgtaaagaaa
ctacaagatgatccctatagagtttgggctttctcaacctttgcactagcagagcgattt
gctacttcaatgaagattccaaaaaatgatagtcgcagactgatctgtgcggtagaagaa
attttattcagacaattaaaaaaaggcagcacacaagttgctccactcgactttgctgat
gccttaactaagcttgtcggcacacctgagctgatgtttgatgcattgaaagcagcagtg
gtcgcgggaacaaaagaaaacccacgcattgtcgtgtcagaatcatcttgtccaaaaaat
atgcctgataatgagcgtttgtatcataggaagtttgccctccccggtacaacgatcatg
gaaaactatgtcacacaacaattacgcgaaaggcttaacaataacattttacctatcgta
attagcgatgatgttctggataattatgtgctgcaaggccataaactgagctatgaacag
aaaaacgcagttagaatgattttgaccaatgccgttaatgtcgttagtggcggagctggc
acaggaaaaacgtcagttctgttttgcgctaatgatttaattaaacaatctggtaatgat
gtccttcaagttgcattgtcaggtaaagcaagtcaacgcttgatacagcagacagaggac
gatgcttttacaatcgcagggttgctaaatgaaattgaaaaaaatgattcatttttagat
cggtatcagacacctgtggtgcatatcgatgaggcaagtatggttgatttgcaatcaatg
taccgtattcttacggtgttcgagaatagagcgttacgtctcgtttttattggcgattgg
gcgcagctagcacccgttggtataggcttgatataccataagcttgtaaagtcagatgtg
gttcctagggttgagttgaccatcaatttcagaagcaatgtcggtattgttgatgcggct
gaaaaaatcaaaaaaggaattgtgcctcaagacaatgacaatgttcaaatcattgaatat
gaatcttctgaagaattacaaaaccttctacaacggcaatactatacgaatacctataat
gataacgaagcacacattatagcggctcgaaaaataactgtttctgagtcaaataccgca
cttcataacttgttatctaaaggtcataaaattattaaagttgctccccaatttcgcatt
ggcgataaagtcatttataagcaaaataacaaggatttgggattagtcaatggcagtact
ggtacgataacggggcaaggccctgaaaccatgcatgtgacgttttcaatcgaaggcgct
aaagaacttatgttggagcaaattcaaaataattccaagggaatatatatgttgcaacat
gcttacgctatgacctgtcacagctcacaaggaagtgaattcaatgttgcgattgtcgtt
gttgaggatttttccttggtagaaagaagttggctttacacagccattactcgcgccaaa
gataaagtcgtattacttgcgcagaaaggtgccattcaaaacgtattggatcgaggattt
aggtttgaaaatatttctgtggggtttgacctatga
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