Colwellia sp. Arc7-D: DBO93_10365
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Entry
DBO93_10365 CDS
T05422
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cola
Colwellia sp. Arc7-D
Pathway
cola03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cola00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DBO93_10365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cola03019
]
DBO93_10365
03009 Ribosome biogenesis [BR:
cola03009
]
DBO93_10365
Enzymes [BR:
cola01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DBO93_10365
Messenger RNA biogenesis [BR:
cola03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DBO93_10365
Ribosome biogenesis [BR:
cola03009
]
Prokaryotic type
rRNA processing factors
DBO93_10365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF7351
Motif
Other DBs
NCBI-ProteinID:
AWB59516
LinkDB
All DBs
Position
2381061..2384153
Genome browser
AA seq
1030 aa
AA seq
DB search
MLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKAKITRIEPSLEAAFVDYGAD
RHGFLPMKEIAREYFPKGYSFQGRPNIKEVLREGQEVIVQIDKEERGQKGAALTTFISLA
GSYLVLMPNNPRAGGISRRIEGDERTDLKASLSKLTLPKGMGLIVRTAGVGKEYEELEWD
LNVLTHHWNAISEAAASRSAPFLIHQETNVILRAIRDYLRRDIGEVLIDRPKIFESVKKH
IEIVRPDFLSKVKLYSNDVPLFTHYQIETQIETAFQREVRLPSGGSIVIDPTEALTSIDI
NSARATKGGDIEETAFNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMR
DAVKQDRARIQLGRISRFGLLEMSRQRLRPSIGETSQGVCPRCSGTGHVRGVESLALSVL
RLMEEEAIKDNTQQVQAQVPVPVATYLLNEKRRSVFHIEKHHNVNILIIPNPNMVTPQYE
VIRVRKDEGIEEASYDMAIKQAVPEEAVMPKFDKEVNKRDEPLLQGMSSPKQAPKMAEPV
AVVEQEAPEKNLITVAIDWVKSLFATEEEVKPAVKQPEKTNNRNNERRPQRGRQGQRRNN
RNDSRSENRNDTRNESRNDNRNDKRKSQAPVANTDNAQKQSSTESAAPAKPQKERVQKPK
EEKVAERRQRRNNRKKVRVDTSDKNTTTTETTKVEAKVVNTTPADTNVVESNNVEAKIVN
TAATEATINVDTTSAEQTTNATKDEQRPRSRRSPRHMRAHGQRRRQNTETNDVSEITEDP
VTARYPEQETVSADTNVNEVSEANEVTESAPTVEQVQKVQADALSEVINDPENEVQQNLP
FDEPQAEATEEVSAPVKEPVTPVESVITPVEDVTPTVVVAEEKTEVVISEAVVEPVSETV
AETPVAATVEQTTPVKELSDEVKTEASTDVVVEASSEVTAEKTSAVDEKPVKVRAKVKNI
KRQVKASSKKAAGKASAPMTKPETVETSGTIPRDFVAAENRAAHATSGKTALVANVTSRT
SAGPTKPTLS
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atgttaattaatgctacacaatctgaagaattacgtgtagcacttgtcgatggtcaacaa
ctttacgatttagatatcgaaagccctggtcacgaacaaaaaaaatcaaatatttataaa
gctaaaatcacccgtattgaaccgtcgttagaagcggcgttcgttgactacggtgctgac
cgtcacggtttcttaccaatgaaagaaatcgctcgtgaatacttccctaaaggttacagc
ttccaaggccgtcctaatatcaaagaagtgcttcgcgaaggccaagaagttattgtacaa
attgataaagaagagcgtggccaaaaaggcgcagcgttaactacttttatcagtcttgcg
ggtagctatttagtattaatgccaaacaatcctcgtgcaggcggtatttcacgtcgtatc
gaaggtgatgagcgtaccgaccttaaagcttcattaagcaaacttaccctacctaaaggc
atgggtttaattgttcgcaccgctggtgttggcaaagaatatgaagagcttgaatgggat
ttaaatgttttaacacaccattggaacgctatttcagaagctgctgctagccgttctgct
ccatttttaatacatcaagaaaccaacgttattttacgcgcaattcgtgactatttacgt
cgtgatattggcgaagtgttaattgatcgtccaaaaatatttgaaagtgttaaaaaacat
atcgagattgttcgtccagactttttaagcaaagttaagctatatagcaacgacgttcct
ctatttacccattatcaaatagaaacacagatagaaacagcctttcaacgtgaagttcgc
ttaccttctggtggttcaattgttattgatccaactgaagcactaacatctatcgatatt
aactctgcccgtgcaacaaaaggcggagatattgaagaaacagcattcaacaccaactta
gaagccgcagaagaaattgctcgtcaattacgcttgcgtgatttaggtggtttagtggtt
atcgatttcatcgacatgacccctgttcgtcatcaacgtgaagttgaaaatagaatgcgc
gatgcagtcaaacaagacagagcacgtattcaacttggtcgtatttctcgttttggttta
cttgaaatgtcacgtcagcgcttacgcccttctattggtgaaactagccaaggtgtttgt
cctcgatgtagcggtacaggtcatgttcgtggtgtagagtcattagcattatctgtttta
cgtttaatggaagaagaagccattaaagacaatacacagcaagttcaggcgcaagtgcca
gtacctgttgctacgtatttattaaacgaaaagcgtcgctcagtatttcatattgaaaaa
catcacaatgttaatattttgattatccctaatccgaatatggttacaccacaatatgaa
gttatccgagtaagaaaagacgaaggtatcgaagaagcaagctacgacatggcgattaaa
caagcagtgccagaagaagctgtaatgcctaaattcgataaagaagttaataagcgtgat
gagcctttacttcaaggtatgtcttcacctaaacaagcgcctaaaatggcagagcctgta
gctgttgttgagcaagaagctccagagaaaaacttaatcacagttgctattgactgggtt
aaatcactttttgctactgaagaagaagtaaagccagcagtcaaacaaccagaaaaaact
aacaatagaaataatgaacgtcgcccacaacgtggtcgtcaaggacagcgtcgcaataac
cgtaatgactctcgtagcgaaaatcgtaatgacactcgtaacgaaagccgtaatgataat
cgcaacgacaagcgtaaaagccaagcacctgtagcaaatactgacaatgctcaaaagcaa
agtagtactgaaagcgctgcaccggctaagcctcaaaaagaacgagttcaaaaacctaaa
gaagaaaaagttgctgaacgtcgtcaacgtcgcaacaatcgtaaaaaagttcgtgtagat
accagtgataaaaacacgacgacgactgaaacaactaaagttgaagctaaagtggttaac
accacacccgcagacactaatgtggttgaaagtaataatgttgaagctaagattgttaat
accgcagcaactgaagcgactattaatgttgatacaacatctgctgagcaaacaactaac
gcgacaaaagatgagcagcgtcctagaagtagacgttcacctcgccacatgcgtgctcac
ggtcaacgtcgtagacaaaatacagaaactaacgatgtaagtgaaattactgaagatcct
gttactgctcgctaccctgagcaagaaacagtttcagcagatactaacgtaaatgaagtt
agcgaagcgaatgaagtaactgagtctgccccaactgtcgaacaagttcaaaaagttcaa
gcagatgcgttaagcgaagttattaatgaccctgaaaatgaagttcaacaaaacttacct
tttgatgaacctcaggctgaagctactgaagaagttagtgctccagtaaaagaaccagta
acacctgttgaatcagttattactcctgtagaagatgtaacacctacagtagtagttgct
gaagaaaaaacagaagtggttatcagtgaagcagttgtagaacctgtctcagaaactgtt
gcagaaacgcctgttgcagctacagttgagcaaacgacacctgtaaaagaactttcagat
gaagttaaaactgaagcttcaacagatgtagtagttgaagcaagttcagaggtaactgca
gagaaaacttcagcagttgatgaaaaacctgtaaaagtgcgcgctaaagttaaaaacatt
aagcgtcaagttaaagcttcatcaaaaaaagcagcaggtaaagcatcagcaccaatgact
aagccagaaactgttgaaactagtggcactatcccacgcgactttgtagccgctgagaat
agagcagcacatgcaacctcaggtaaaactgcacttgttgctaatgttactagccgaaca
tcagcaggaccaactaaaccgacattgagttaa
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