Colwellia sp. Arc7-D: DBO93_10870
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Entry
DBO93_10870 CDS
T05422
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cola
Colwellia sp. Arc7-D
Pathway
cola03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cola00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DBO93_10870 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cola03019
]
DBO93_10870 (recQ)
03400 DNA repair and recombination proteins [BR:
cola03400
]
DBO93_10870 (recQ)
Enzymes [BR:
cola01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DBO93_10870 (recQ)
Messenger RNA biogenesis [BR:
cola03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DBO93_10870 (recQ)
DNA repair and recombination proteins [BR:
cola03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DBO93_10870 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
RecQ_Zn_bind
HRDC
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AWB58019
LinkDB
All DBs
Position
2492419..2494239
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AA seq
606 aa
AA seq
DB search
MWLTKGLNLNINTAKSVLQNTFGYADFRHQQANIISEIINGKDVFTLMPTGGGKSLCYQI
PAIVLQGVGIVVSPLIALMKDQVDALKLQGVKAEFLNSSQDHDEQRRVEQLITSGNVDLL
YVAPERLLSDYFLSLLDRINIALFAFDEAHCVSQWGHDFRPEYQKLSIIGHRYPNTPKIA
LTATADLKTRDEIIQVLNLTGAKTFVHSFDRPNIQYRISEQKNSKEQLLQFINTEHENDA
GIVYCLSRKSVETTAQWLCEQGKTALPYHAGLANEVKDSNQQRFLREDGIIIVATIAFGM
GIDKPDVRFVAHLNLPKSIEAYYQETGRAGRDGLHANTWLAYGMQDVIKLKQMASQSDGN
EQFKFITQRKIDALLGYCEVSSCRRQVLLNYFGESLAEPCGNCDNCLNPPTTWDGTSAAQ
KALSTVYRTGQRFGVGHQIDVLTGKVTPKITSLNHQQLSTFNIGNELKAMEWQTVFRQLI
SMGYLAVEMDYGVLKLTEKARPLLKGESTIQLKVPKYKQSKPAQNKKQAIQNELTTAEIS
SFEKLKQQRTLWAKERNVPAYVVFHDATLMDIAKKNPKTSKQLLEVNGLGKTKVELYGEK
IIALLN
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atctggctaacaaagggacttaatttgaatatcaacaccgcaaaatccgtattacaaaac
acatttggttatgcagattttcgtcatcaacaagcgaatatcattagtgaaatcattaat
ggtaaagatgtattcacccttatgccaaccggtggcggtaaatcactgtgttaccaaatt
ccagctattgtgttgcaaggtgtgggtattgtggtgtcgccccttatcgccttgatgaaa
gatcaagtggacgcgttaaaactgcaaggggtaaaagctgagtttttaaactcttctcaa
gaccatgatgaacagcgccgtgtagaacaacttataacctcaggcaatgttgatttattg
tatgtggcgccagaaagactattaagtgactattttctctcccttcttgaccgtatcaat
atcgcgttatttgctttcgacgaagcgcattgtgtctcacagtggggtcatgattttaga
cctgagtaccaaaaactttctatcatagggcatagatacccgaatacacccaaaattgcc
ttaaccgcaacagcagatcttaaaactcgagatgaaatcattcaagttttgaacttaacg
ggtgctaaaacgtttgtacacagctttgatagacccaatattcaataccgcattagtgaa
caaaaaaatagtaaagaacagttattgcagtttattaataccgaacacgaaaatgacgca
ggtattgtgtattgtttgtctcgaaaatcagtagaaacaaccgctcaatggttatgtgaa
caaggaaaaacagccttgccttatcacgcaggcttggctaatgaggttaaagatagtaac
caacaacgatttcttagagaagacggtattattattgttgccactatcgcttttggtatg
ggcattgataagccagatgttaggtttgtagcacatttaaacttaccaaaaagtatcgaa
gcatactaccaagaaaccggacgcgcgggccgagacggtttacatgccaacacatggtta
gcgtatggcatgcaagatgttataaaactaaaacaaatggcaagtcaaagtgacggtaat
gaacagtttaaatttataactcagcgtaaaatagacgcattattgggttactgtgaagtc
agttcgtgtcgcagacaagtgttattaaattatttcggagaatcattagcagagccctgc
ggtaattgtgataactgcttaaaccctccaaccacttgggatggcaccagtgccgcccag
aaagcgctttcaacagtttacagaacaggtcaaagatttggtgttggtcatcaaattgat
gtactaaccgggaaagtaaccccaaaaattaccagcttaaatcaccaacaactctcaacc
tttaatattggtaacgagctcaaagcaatggaatggcaaacggtgtttagacaacttatt
tccatgggttatttagccgttgaaatggattatggcgtgttaaaattaaccgaaaaagca
cgacctttattaaaaggcgaaagtactattcaactaaaagtgccaaagtataaacagtcc
aaaccagctcaaaataaaaaacaagccattcaaaatgaattaacgacagcagaaatatcg
agctttgagaaacttaaacaacaacgaacactctgggcaaaagagcgaaacgtacctgca
tatgttgtttttcatgacgcaacattaatggatatagctaaaaaaaacccaaaaacatca
aagcaactacttgaggttaatggcttaggcaaaactaaagtggagctttatggtgagaaa
attattgcgctattaaactga
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