Colwellia sp. Arc7-D: DBO93_14280
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Entry
DBO93_14280 CDS
T05422
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
cola
Colwellia sp. Arc7-D
Brite
KEGG Orthology (KO) [BR:
cola00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cola03009
]
DBO93_14280
Enzymes [BR:
cola01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DBO93_14280
Ribosome biogenesis [BR:
cola03009
]
Prokaryotic type
rRNA helicases
DBO93_14280
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Flav_NS3-hel_C
P-loop_SecA
AAA_22
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AWB58607
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Position
3301820..3303055
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AA seq
411 aa
AA seq
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MFEQFDLDSALLGGVENAGFKKPTSIQELVLPVAMTGKDVLASAPTGTGKTAAFLLPAAQ
HLLDYPRRGSGFPRVLILSPTRELAIQTHEQCEKLTALTSIKSAVITGGVNYGSHKEVLT
GNTDILVATPGRLMEYIESEQFDSREIEILILDEADRMLAMGFAETINRIVGEARWRKQT
MLFSATLEGAAVVRFSRELLNDPVFLEANPSRKEKAKIHQWMHLADDKDHKFALLMNILQ
QEEVERVLVFANKRETVQYLSGKLYAENMPCVWLEGKMQQDKRNTSVERLRNGTVNVLVA
TDVAERGLDIDDITHVINFDMPRTADIYLHRIGRTGRAGNKGTAISLVEAHDMTVIGKIE
RYIKERLPRRVIETLRPKYKEARVATKKTKVKRTVAQKKAKAKKMAKRTKS
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagcagtttgacctagattccgcattattaggcggcgttgaaaatgcaggcttt
aaaaagccaacgtctatccaagaattagtacttccagtcgctatgacaggcaaagacgta
ttagcttcagccccaacaggaaccggaaaaacagcggctttccttttacccgctgctcaa
cacttgctcgactatccacgtcgaggttcaggttttccgcgtgtactcattttgtcacca
acacgcgaacttgccatacaaactcatgaacaatgtgagaaattaaccgcgctaactagc
attaaatctgcagttattaccggtggtgttaattatggcagccataaagaagtgctaaca
ggtaacaccgatattttagttgctacacctggccgtttaatggaatacattgaaagcgaa
cagtttgatagccgtgaaattgaaattttgattttagatgaagctgaccgcatgcttgca
atgggctttgctgaaaccattaatcgcattgttggcgaagcacgctggcgtaaacaaacc
atgctgttttctgcaacactcgaaggtgctgcggtagtgcgtttttctcgcgaactttta
aacgatccggtatttttagaagcaaatccttctcgtaaagaaaaagcaaaaatacatcag
tggatgcacttagctgacgacaaagatcataaattcgccttattgatgaacatattgcag
caagaagaagttgaacgtgtacttgtttttgctaataaacgtgaaaccgtacagtatctt
tcaggcaaactttatgctgaaaacatgccttgcgtatggcttgaaggcaaaatgcaacaa
gacaaacgtaacacctcagtagaacgtttacgtaatggtacggtaaatgttttagtggca
accgatgtagctgaacgtggtctagatattgacgatataacccatgtaataaattttgat
atgccacgcactgctgatatatatttgcatcgcattggccgtacaggtcgtgctggcaac
aaaggcaccgctatttcattagttgaagcacatgatatgactgttataggtaaaatcgaa
cgctacattaaagagcgcttacctagacgagtgattgaaacgttaagaccgaaatataaa
gaagcacgtgttgccaccaaaaagaccaaagtgaaaagaactgtggcacaaaagaaagcg
aaagcgaaaaaaatggctaaacgaacaaaaagttaa
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