Colwellia sp. Arc7-D: DBO93_16530
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Entry
DBO93_16530 CDS
T05422
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cola
Colwellia sp. Arc7-D
Pathway
cola03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cola00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DBO93_16530
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cola03019
]
DBO93_16530
03016 Transfer RNA biogenesis [BR:
cola03016
]
DBO93_16530
Enzymes [BR:
cola01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DBO93_16530
Messenger RNA biogenesis [BR:
cola03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DBO93_16530
Transfer RNA biogenesis [BR:
cola03016
]
Prokaryotic type
tRNA degradation factors
DBO93_16530
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
TENA_THI-4
HTH_12
Motif
Other DBs
NCBI-ProteinID:
AWB59004
UniProt:
A0A2S0V463
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All DBs
Position
complement(3836472..3838913)
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AA seq
813 aa
AA seq
DB search
MTDKDPHKQREADKYDKPVASRELLLSLIEKSNIPPTFKAIVKQLQYTDEEMIVGVKHRL
RAMENSGQIVFNKFKQYAVANRSDVLTGKVIGHRDGFGFFAPDSGDKDFYISSYEMKRVI
HGDIVEAILIDRTDRKGRKEVKILDVIKPRTAGVVGRFYVDHHIACVVPDDARIQQEILI
QPDKKLGARHGEVVVVNVIQRPTKRSNAVGEVIEVLGEHMAPGMEIEIALREHDLPNQFS
PEVIAEVSGIADEVEESAKAPRVDLRELPLVTIDGEDARDFDDAVYCKPIADGGWTLWVA
IADVSYYVRDKTALDEEAISRGNSVYFPSQVIPMLPEKLSNGLCSLNPDVDRLCMVCEMT
INAAGELAGSKFYPAVMRSKARFTYSKVATILGVNPEQKDEDYRAELRTQYQALIPDLDN
LNTMYHVLSKARTKRGAIAFETTESQFLFNSDRKIESIVAMVRNDAHKIIEECMILANVA
TAEFIEKHKKPGLFRVHDKPSEDKYNNFLSYVNELGLDLSSMGERKEQPEPQDYCHILEK
IADRPDQELIQTMLLRSMRQAVYQSDNIGHFGLALPSYSHFTSPIRRYPDLVVHRVIKAI
LDEQAKDEANAGAHNYTPEAVIELGEHCSMTERRADDATRDVSDWLKCEYMQDHVGDTFT
GVISTVTNFGLFVRLADLHIEGLVHITSLGHDYYHFDDVRMCLTGENTGAKYHIGDTVEV
QVAAVNLDEKKIDLALAGANAVIKRAKPQTKSKSSDKHKRGKRSAGKSVSEDAKASFDEK
AQPAKAGDKTTTKAKKRKARKKRPGKNARKAVD
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgataaagacccacacaaacagcgtgaagctgacaaatatgataaaccggtagca
agccgagagctgttattgtcgctgatcgaaaaatctaatatcccgccaacctttaaagct
attgttaagcagttgcagtataccgacgaagaaatgattgtcggagtaaaacatcgtctg
cgcgccatggaaaatagcggtcaaattgtgtttaacaaatttaaacaatacgctgttgca
aatcgtagtgatgttttaacgggtaaggttattggtcatcgtgatggttttggtttcttt
gcccccgatagtggcgacaaagatttctatatttcatcttatgaaatgaagcgggttatt
catggtgatatagtcgaagctatactgattgatcgtaccgatcgaaaaggtcgcaaagaa
gttaagatacttgatgttattaaacctcgcactgctggagttgtaggtcgattttatgtt
gatcatcatattgcctgtgttgtgcccgatgatgcccgtattcaacaagaaattttgatt
caaccagataaaaagttaggcgcccgtcacggcgaagtcgttgttgttaatgttattcaa
agaccgactaaacgttcaaatgcggtgggtgaagtgattgaagtgttaggtgagcatatg
gctcccggtatggaaattgaaattgctttacgtgagcacgatcttccaaatcaattttct
cctgaagttattgctgaagttagcggcattgcagatgaagttgaagaatctgcaaaagca
ccaagagttgatcttcgtgaactacccttagttactattgatggtgaagacgcacgagat
tttgacgacgcggtttattgtaaacctattgctgatggtggttggacgctttgggttgct
atcgctgacgtaagctattacgtgcgtgataaaaccgcattagatgaagaagctatttct
cgtggtaattcagtgtattttccaagccaagttattcctatgttgccggaaaagctttct
aatggcttatgttcattaaatcctgatgttgaccggttgtgtatggtttgcgaaatgacc
atcaatgcagcgggcgagctagccggttcgaaattctatcctgcggtcatgcgctctaaa
gcacgttttacttacagtaaagtagcaaccatattaggtgtgaacccagagcaaaaagac
gaagattatcgcgcagaattacgaacacagtatcaagcattgatcccagatttagataac
ctaaatactatgtatcatgtgctgagtaaagcgagaactaagcgtggtgcaattgctttt
gaaaccactgagtctcaatttctttttaacagtgatagaaaaatagaatctattgtggcg
atggtacgtaacgatgcacataaaatcattgaagaatgtatgattttagccaacgttgct
acggcagagtttatcgaaaaacataaaaagccaggtctatttcgtgttcacgataagccg
agtgaagacaagtacaataactttcttagttacgttaacgagcttggtctcgacctatct
tcaatgggagagcgtaaggaacaacctgagccgcaagactattgtcacatattagagaaa
atagccgaccgacctgatcaagagctcattcaaaccatgttattgcgctcaatgcgacaa
gcggtatatcaaagcgataatattggccattttggtttagcattaccatcatatagtcac
tttacttcgcctatacgccgttatcctgatttggtggtacatcgcgttattaaagctatt
ttagatgaacaagctaaagatgaagcgaacgctggcgcgcataattatacccctgaagca
gtaatagagcttggtgaacattgctctatgaccgagcgtcgtgctgatgatgcaacacgt
gatgtttcagactggcttaaatgtgaatatatgcaagatcatgttggtgatacatttact
ggtgttatatcgactgtaactaactttggtttatttgtacgtttagctgacttacacatt
gaaggcttagtacatattacctcgttaggccatgactattatcattttgatgatgtacgc
atgtgtttaacaggcgaaaatacgggtgctaagtatcatattggcgacacggtagaagta
caagttgcagcggttaatcttgatgagaaaaaaattgacttagcactcgctggtgctaat
gctgttatcaaacgtgcaaaaccacaaacgaaaagcaaaagctcagataagcataaacgc
ggtaaacgctctgcaggtaaatcagtatcagaagacgcaaaagcgagttttgatgaaaaa
gctcaaccagctaaagccggcgataaaactacaacaaaagctaagaagcgcaaggcgaga
aaaaagcgtccaggtaaaaatgctcgcaaagccgttgattaa
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