Colwellia sp. Arc7-D: DBO93_16920
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Entry
DBO93_16920 CDS
T05422
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
cola
Colwellia sp. Arc7-D
Pathway
cola00300
Lysine biosynthesis
cola00470
D-Amino acid metabolism
cola01100
Metabolic pathways
cola01110
Biosynthesis of secondary metabolites
cola01120
Microbial metabolism in diverse environments
cola01230
Biosynthesis of amino acids
Module
cola_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
cola00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
DBO93_16920
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
DBO93_16920
Enzymes [BR:
cola01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
DBO93_16920
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
EccE
Nudix_hydro
Motif
Other DBs
NCBI-ProteinID:
AWB59618
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All DBs
Position
complement(3901640..3902893)
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AA seq
417 aa
AA seq
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MLNTATRPNWLRPSVIQPLNEHRNALKNGAEVDQDEVGFFLYDLDYLAQHLSTLMQQDVI
KLWFAVKANPLSRVITTLAQQGFNFDVASQGELTQVLAQNVQAERILNTGPAKSKQQMKA
FLTQGVRTFVVESLNQLQWLNEAATELSCRPQVLLRVQLQWDEGEKNPLGGNEVTAFGLS
CQEWQTIKVSDFLALNINGLHIFQWGNMLSNERMFELWSQMVTPLLSLAEQLEMTLEVLD
LGGGLGVDYLQTGQSLHWDNIVADLAKIKARAGVSELWLELGRFAVAEMGYYVTSVVDRK
ENFDQQQLVLSGGINHLIRPAITEQPFPVAMLRESQASESYFDLHGPLCTSLDKLGTLAI
ANDVGIDDQLIFGLAGAYGFTESMPFFLCHPIAAEYVLQQGKIEQVRAAQPATWYLR
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgttaaacacagcaactcggccaaattggctaagaccgtctgtaattcaacccctgaac
gaacatcgtaacgcactgaaaaatggcgctgaggttgatcaagatgaagtgggatttttt
ctttacgatttagattatctagcacagcatttgtcaacgttgatgcaacaagatgtgatt
aaactgtggtttgcagtgaaagcaaacccattgtcacgtgtgatcacgacgttagctcag
caaggttttaattttgacgttgccagtcaaggagaactcacacaagtgcttgcgcaaaat
gtgcaggctgagcgtattcttaataccggaccagcaaagtcgaaacagcaaatgaaagcg
tttttaacacaaggggttcgtacctttgttgttgagagcttgaaccaattgcaatggcta
aatgaagctgcgactgagttgtcttgtcgaccgcaagtattattaagagttcagctccag
tgggatgaaggtgagaaaaatccattaggcggtaatgaagtaaccgcctttggtttatcg
tgccaagaatggcaaaccatcaaagtaagtgattttttagccttaaacattaacggctta
catatattccaatgggggaatatgctaagtaatgaacgcatgttcgagctttggtcacaa
atggttacgccgttgttatcattagcagaacaattagaaatgacgctagaggttttagat
ttaggtggtggtttaggtgtagattatctgcaaacaggccaaagcttgcattgggataat
attgttgctgatttagccaaaataaaagcccgagctggcgttagtgaactttggttggag
ctaggtcgctttgcggttgccgaaatgggctattatgttacctctgttgttgatcggaaa
gaaaacttcgaccaacagcaattggtactttcgggtggtattaatcatttaattcgccct
gcgattaccgaacagccttttcctgtagctatgcttagagagtctcaagcaagcgagagt
tatttcgatttacatggcccactttgtactagtttagataaactcggtaccttggcaata
gccaatgatgttggcattgatgaccaattaatttttggtttggcaggggcttatggtttt
actgaaagtatgccattttttctttgtcacccaatagctgctgaatatgttcttcagcaa
ggtaaaatagagcaagtgcgtgcagctcaacctgctacttggtatttacgttag
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