Colwellia sp. Arc7-D: DBO93_17855
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Entry
DBO93_17855 CDS
T05422
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cola
Colwellia sp. Arc7-D
Pathway
cola03420
Nucleotide excision repair
cola03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cola00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DBO93_17855
03430 Mismatch repair
DBO93_17855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cola03400
]
DBO93_17855
Enzymes [BR:
cola01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DBO93_17855
DNA repair and recombination proteins [BR:
cola03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DBO93_17855
MMR (mismatch excision repair)
Other MMR factors
DBO93_17855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
AWB59240
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All DBs
Position
4109437..4111611
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AA seq
724 aa
AA seq
DB search
MDVSELLESLNDKQRDVVAAPLQNMLVLAGAGSGKTRVLVQRIAWLMKVEHASPHSILAV
TFTNKAAAEMRARVEQTVDGNVHGMWVGTFHGLAHRLLRMHFQEAKLPQAFQVLDSDDQL
RMVKRIVRSLELDEKRWPPKQFLWYINGKKDEGLRPHHIDAQHDVTEETFVKVYRVYQDT
CDRAGLVDFAELLLRAHELWLNNPELLAHYQQRFSHVLVDEFQDTNAIQYAWLNLLGKKS
GNVMIVGDDDQSIYGWRGAKIENIQRFLQDFDGAKTIKLEQNYRSTANILNAANQLIGNN
NNRLGKDLWTEDDAGEKISIYTAFNEIDEARFVAGRITDWKNKKGSLDDVAILYRSNAQS
RLMEEALIQAKLPYRIYGGLRFFERQEIKDALAYLRLLNNRDDDAAFERVINTPTRGIGN
QTLSLVRDAARSLESTLWQACQHMVKNEELKGRSAKVIQQFINVIDQLEDDSSHLNLDQQ
ANYVIQHSGLKAMYQAEKGERAEARIENLNELVTACQTFEVDPELAEEQSPLTSFLTHAA
LESGESQADDYESAVQLMTMHSAKGLEFPLVFIAGLEEGMFPSQQSVEDLSRLEEERRLC
YVGMTRAMQKLYLCHAESRRLYGQEKHHKASRFLRELPDTCTEEIRMQSQVSKPRTTGKF
SSALTLETFGNSGFKLGENVRHTKFGDGVVLNYEGSGPQSRIQVNFADVGCKWLVVAYAN
LEKL
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggatgtttctgaattacttgaatcgttaaacgataaacaacgcgatgtagtcgccgca
cccctacaaaatatgttggtacttgctggtgctggcagtggtaaaacacgtgttttagta
caacgtattgcttggctgatgaaagttgagcatgcatctcctcatagcattttagcggtt
acttttaccaataaagccgcggcagaaatgcgtgcccgagttgaacaaaccgttgatggc
aatgtgcacggaatgtgggtaggtactttccatggtttagcacatcgtttattacgtatg
cactttcaagaagcaaagctacctcaagccttccaagtacttgattctgacgatcaactt
cgtatggttaagcgtattgttcgttcattagaattagacgaaaagcgttggccgccaaaa
caatttctttggtatatcaatggtaaaaaagatgaaggtttgcgccctcaccatattgat
gctcaacatgacgtaacagaagaaacatttgttaaagtttatcgtgtttatcaagatact
tgtgatcgtgcaggcttagtcgattttgctgaactattattgcgtgctcatgagctttgg
ttaaataatccagagttattagctcattaccagcaacgtttttcgcatgtactcgtagat
gaatttcaagataccaatgcgattcagtatgcttggttgaacctgttaggcaagaaaagt
ggtaatgtcatgatcgtaggtgatgatgaccaatctatctatggctggcgtggggctaaa
attgaaaatattcaacgttttttacaagactttgatggtgctaaaaccattaagctcgag
caaaactaccgttctaccgccaatattctcaatgctgctaatcagttaattggcaacaat
aataatcgtcttggtaaagacctatggaccgaagacgatgcaggcgaaaaaatatctatc
tacaccgcatttaacgaaatagatgaagcgcgctttgttgccggacgtattacagactgg
aaaaataaaaaaggctcattagatgatgtcgctattttataccgaagtaatgcccaatct
cgtttaatggaagaagccttaattcaagcgaaattgccttaccgtatttatggcggttta
cgattttttgaacgtcaagaaattaaagacgcactcgcttatttacgtttactcaataac
agagacgatgatgcggcatttgaacgtgttattaataccccaacacgtggcattggcaat
caaaccctaagtttagtgcgtgacgctgcaagaagtttggaaagtaccttgtggcaagct
tgtcagcacatggtaaaaaatgaagagctaaaaggtcgcagtgcgaaagttattcagcag
ttcattaatgttattgatcagttagaagacgactcaagtcacctcaacctcgaccaacaa
gctaactatgttattcaacattctggcttaaaagctatgtatcaagcggaaaaaggcgaa
cgtgctgaagcccgtattgaaaacttaaatgagttagttactgcttgtcaaacctttgaa
gttgaccctgaactggcagaagagcaaagcccactgacgtcatttttaacccatgctgcc
ttggagtctggtgaatcacaagccgatgattatgaatctgctgtgcagcttatgaccatg
cattcagctaaagggcttgagtttccattagtctttattgctggattagaagagggcatg
ttcccttctcagcagtcagttgaagaccttagccgcttagaagaagaaaggcgtttatgt
tatgttggcatgacacgagcaatgcaaaagctctatttatgtcatgcagaaagtcgtcga
ttgtatggccaagaaaaacatcataaagcgagtcgttttttaagagagctacctgacact
tgtaccgaagaaattcgtatgcaaagccaagttagcaagccaagaaccacaggtaaattt
tcttctgcgctaacccttgaaacctttggcaactcaggttttaaattgggtgaaaatgtt
cgtcatactaaatttggtgacggcgtggtattaaattacgaaggcagcggtcctcaaagt
cgtattcaagtgaactttgcagatgtaggctgtaaatggctagttgttgcttatgctaat
ttagagaagctttag
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