Collinsella sp. zg1085: KPC83_00480
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Entry
KPC83_00480 CDS
T09607
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
coll
Collinsella sp. zg1085
Pathway
coll03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
coll00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KPC83_00480 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
coll03400
]
KPC83_00480 (mfd)
Enzymes [BR:
coll01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KPC83_00480 (mfd)
DNA repair and recombination proteins [BR:
coll03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KPC83_00480 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
Cas3-like_C_2
UB2H
AAA_22
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QWT17684
UniProt:
A0A975XQ47
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All DBs
Position
103435..107013
Genome browser
AA seq
1192 aa
AA seq
DB search
MLIHRIAAQLYTAEAPQVIEQALAEGSDATLAVSQSARTLIVAAQFARNPRPTLYVVSGE
DTAARALRSLGAYVGFDYVVAFPERTDYPWSDKAPDDSQIAMRSSALGRLAQGEPCIMVA
SARALLRCVPPQESRYWQSVSFVLGTETPFENVARQLVHMGYVNTGDVEAPGTFRVQGDT
VDVWPAQSSAPVRLEFFGDEIDRIRRMLPSTGQTIGDISSIELYPCRELALTDKAVASLR
RALYQAAQTDTELAALLEIAEQGIAAPELDRFLPLMYEHVATPLEHLSKDTLIVLSEPRS
LFDDCLRAYEELERRAAEAHVHNLHGLYVRPQELDFGAQQRLNLVSIIRAGGTVTAELKV
EQVAIAGSSSRFISRVQEFVSKRYACLFAIPDRGARESMELSFTDELIPFEESLEADPAN
QDAVTELVQVALRARKKDRLNTRGLEEGAKHQVPTITRGRVTFVDMVLPGGTVIPEANLA
VMSVTDLNARMDAKRARGRARRRLDATELTFPFKPGDYVVHATHGIAHFSEIVRQEVGGR
ERDYFLLEYADGDKLYVPLEQVDRISRYVGPDGSNPRLTRLNTADWSRAMAKARKSAKKL
AFDLVDLYTRRASVTGLSCPPDTPEQLEMEESFPYEPTHDQLDAIADIKGDMESTRPMDR
LLCGDVGFGKTEVALRAAFKCVDSGRQVMVLCPTTILAQQHYQTFANRFAPFGVEVEVMS
RFRTPAQQRRSLAAFAEGSVDVLVGTHRLLSSDVNPNKLGLVIIDEEQRFGVQHKEQLKN
LREQIDVLTLSATPIPRTMQMAISGVRDMSLITTPPTGRRPVAVHVGEYDPDTVSAAIRL
EMERGGQVYYVSNRVKTIEDAVERVHEVTPEARVGVAHGKMSAREVEDVMVRFAAHEIDV
LVATTIIESGIDNPHTNTLIIEDSQRLGLAQLYQLKGRVGRSATQAYAYFMFPGELPLTQ
EATERLMALSEFQDLGSGMRIAMRDLEIRGAGSLMGAEQHGNLSSVGFDLFTNMLGQAVA
EARGDAHDALELGDFAINLVADYYLSEEYVPAVDRRVLLYRQLAGATELEMVDELQESCQ
QDYGELPDAARNLFDRARLRIRGGRLGMESVSLSGGRLVFQGIDVPSQLATTLRQELGAM
NYPKSHKFTVPYRAGLGKGSGLGRGIDAEAEGAGVVQVALELIAGFGSSDDE
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgcttatccaccgcattgccgcccagttatataccgccgaggcaccacaggtgatagaa
caggctcttgctgagggttcagatgcaacgcttgccgtttcgcaatcagctcgcacgctt
atagtagctgcgcagtttgcgcgcaatcctcgtccaaccttgtatgtggtatcaggtgag
gatacagcagcgcgtgccctgcgctcactgggtgcttatgtgggctttgattatgtggtc
gcgtttcctgagcgtacagattatccctggtcagacaaggcacctgatgatagtcagatt
gctatgcgctcctcagcacttggacgcttagcacaaggagagccgtgtattatggtggcc
tcggcgcgggcgttgttgcgctgtgttccgccgcaagagagtagatattggcagtcggtg
agctttgtacttggtaccgaaactccgtttgagaacgttgcacgtcagctggtgcatatg
ggttatgtcaataccggcgacgtagaggctcctggcacctttcgtgtacagggcgacaca
gtagatgtgtggccagctcaaagtagtgcaccagtgcggcttgagttttttggcgatgag
attgatcgcatacgtcgtatgctgccctcaactggacaaactattggagatatatcgtct
atagagctgtatccttgccgtgagttggcactaactgataaggcggttgcttcgttgagg
cgagcactgtatcaagcggcgcaaaccgatacggagttggcagccttgttggaaattgct
gaacaaggcattgcagcgcctgaactagaccgctttttaccgctcatgtatgagcatgtt
gccacgccacttgagcatttgagcaaagatacgctcattgttttgtcagagccacgctca
ctgtttgatgactgtctgcgtgcgtatgaggaacttgagcgccgtgcggctgaggctcat
gtccataatttgcacggtctgtacgtgcgtccacaggagcttgactttggcgctcagcag
cggcttaaccttgtgagtattattcgcgcaggcggtacagttaccgctgagttaaaggtt
gaacaggttgcaattgcgggttcaagcagtcgatttatatcccgtgtgcaggagtttgta
tcaaaacgatatgcctgcttgttcgctattcctgaccgtggtgcgcgtgaatcgatggag
ctgagttttactgacgagttgattccgtttgaagaatcacttgaagcagaccctgctaat
caagatgcggttaccgagctggtacaagtagcgctccgcgctcgaaagaaagaccgcctc
aacacgcgtgggctggaagaaggcgccaagcatcaagttccaaccattacgcgcggacgg
gtaacctttgttgatatggtgcttccaggcggcacagttattcctgaggctaatcttgcg
gttatgagcgtaaccgacttgaacgcgcgcatggacgctaagcgcgcgcgtgggcgtgcg
cgccgccgactcgatgcaaccgagcttacgtttccttttaagccgggcgactatgtagta
catgcaacgcatggcatagcgcattttagcgagattgtccgtcaagaagtgggaggtcgt
gagcgcgattatttcttgcttgaatatgccgatggcgacaagctgtatgttcccttagag
caagttgaccgtatctcgcgttatgtgggacccgatggctcaaatccgcggctcacgcgt
ctgaatactgctgactggtcacgcgcgatggcaaaggcacgtaagtcggccaaaaaactc
gcgtttgacttggttgatttgtatacacgccgcgcttcggttactggtttgtcgtgcccg
ccggatacgcctgagcaacttgagatggaagaaagcttcccttatgagcctacgcacgat
cagcttgatgcaattgcagacataaagggcgatatggaaagcacgcgccccatggatcgc
cttttgtgcggagacgtaggttttggaaaaaccgaggtggctctgcgtgcagcgtttaag
tgcgttgatagtggtcggcaggttatggtgctctgccctacaactattctggcgcagcag
cactatcaaacctttgctaaccggtttgcaccctttggtgttgaagttgaggttatgtcg
cgctttagaacacctgctcagcagcgccggtcattggcggcgtttgctgaggggagcgtt
gatgtgttggtgggtacgcaccgactgctttcgtctgatgtaaacccaaacaagctgggg
cttgtaattattgatgaagagcagcgctttggcgtgcagcataaagagcaacttaaaaat
ttgcgtgaacaaattgacgtgctgacgctctcagcaacgcctattccacgtaccatgcaa
atggcaatttcgggcgtgcgtgatatgagtcttattaccacgccgcccacaggtcgtcgt
ccggttgctgtgcatgttggagagtatgaccccgatactgtttctgctgctattaggctt
gagatggaacgcggcgggcaggtttattatgtgagtaaccgcgtaaaaacaattgaagac
gctgttgagcgtgtgcatgaggtgactcctgaggcgcgcgtgggtgtggcgcacggcaaa
atgagtgcgcgtgaagttgaagatgtgatggttagatttgctgctcatgagattgatgtg
cttgtggcaacaaccatcattgagagcggtatcgataatcctcataccaatacgcttatt
attgaggattcgcagcgtttgggattggcgcaactctaccagcttaagggacgtgttgga
cgctcggctacgcaggcatacgcatactttatgttcccaggcgagctaccgcttactcaa
gaagctactgagcgcctgatggcactttctgagttccaagatttgggcagtggtatgcgc
attgccatgcgcgaccttgaaattcgaggtgcaggctcgcttatgggggcagagcagcac
ggtaatttgtcgagcgttggctttgatttatttaccaatatgctcgggcaagcagtggca
gaggcacgcggtgatgcgcatgatgccttggagctgggggactttgccatcaatctggta
gccgattattacctctcggaagagtatgttcctgcagttgatagacgtgtattgctctat
cgtcagcttgcaggagcaacggagctagagatggttgatgaactgcaggaaagctgccag
caggattatggtgagttgcccgatgcagcacgcaatctgtttgatcgggctcgcttgcgc
attcgtggcggtcgtttgggcatggagtccgtgtcgctttccggtggtaggctggttttt
cagggtattgatgtgccgtctcagcttgccactacgttgcgccaagagctgggggctatg
aattatccaaagtctcataagtttacggtgccgtatcgtgcgggactgggaaagggctcg
gggcttggtcgtggaatcgacgctgaggcagagggtgcaggtgtggtgcaggtggcgttg
gagctgattgctggctttggatcatctgatgatgaatag
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