Collinsella sp. zg1085: KPC83_00590
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Entry
KPC83_00590 CDS
T09607
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
coll
Collinsella sp. zg1085
Brite
KEGG Orthology (KO) [BR:
coll00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
coll03009
]
KPC83_00590 (rlmD)
Enzymes [BR:
coll01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KPC83_00590 (rlmD)
Ribosome biogenesis [BR:
coll03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KPC83_00590 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Cons_hypoth95
UPF0020
MTS
Methyltransf_15
TRM5-TYW2_MTfase
Methyltransf_24
N6_N4_Mtase
NAD_binding_8
PrmA
PCMT
Methyltransf_4
CMAS
Motif
Other DBs
NCBI-ProteinID:
QWT17703
UniProt:
A0A975SDH1
LinkDB
All DBs
Position
complement(128619..129863)
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AA seq
414 aa
AA seq
DB search
MATRRNKSDTGAPCPIMHSCGGCELLGLPYLKQLNRKQRAIETLFEPLLKEFNWDITVDA
IRGMGGQAGQPHSIARPLHFRYKAATPFAPNAHGGYQAGLFARGSHHIIETPDCVVEAPE
ARSILNSVARIAEKLNIPAYDEDRQRGQLRYAILRLGWQTNEGLLTLVTAHRDIPRFNEL
IKQIAAHNPRITCIAQNINGRTTNAILGAETHLVWGQPCMHDKLLGCTFEISPGAFYQVN
PKQTEVLYRLAIDGMSLDAGDTLLDAYCGSGTIGLCAAHAARELGIDVQLLGVERNPSGI
ADAARNAQLNQLDNCATFIAEDATDYIQRLAEQKRHIDVLVMDPPRAGSTPEFLSVAAEL
APKRIVYISCNPATQVRDLTLLGKAGYQLTRLTPVDMFPHTAHVETVCLLSHKG
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggctacacgacgcaacaaatccgacaccggtgcaccctgccctatcatgcacagctgc
ggtggctgcgagctgctgggtctcccctacctcaagcaactcaatcgaaagcagcgtgct
atagagacgctctttgaacctctgctcaaagagttcaactgggatattactgttgacgca
attcgtggcatgggtggacaagctggtcagccacacagcatcgcacgtccactgcacttt
cgttataaagctgctaccccgtttgctccaaacgctcacggcggctatcaagcaggactt
ttcgcacgtggaagtcatcacataatcgaaacacctgactgtgtagtcgaggctcccgag
gcgcggtctatactcaacagtgttgcgcgcatcgcagaaaaactcaacatccctgcctat
gatgaagatcgtcagcgtggtcagctgcgttacgccattttgcgtctcggctggcaaaca
aacgaagggctccttacactcgttaccgctcatcgcgatatcccacgctttaatgagctc
atcaagcaaatcgccgcacataatccgcgtattacgtgtattgcgcaaaacatcaacggg
cgcactaccaatgcaattcttggtgccgaaacgcatcttgtatggggacaaccttgcatg
catgacaagcttcttggctgcacgtttgaaatttctcccggagccttttaccaagtcaat
cctaaacaaacggaagtgctctatcgccttgccattgacgggatgtcacttgatgcaggt
gatacgcttcttgatgcctactgcggcagcggtaccattggtttatgcgcagctcatgca
gcacgagagcttggtattgacgtacaactgcttggtgtcgaacgcaatccatcaggcata
gccgatgcagcacgtaatgctcagctcaaccaacttgataactgtgcaacctttatcgct
gaggacgcaactgactatatccagcgccttgccgagcaaaaacggcatatcgatgtactc
gtaatggatccgccgcgcgctgggtcaacgcctgagtttttatcggtggcggctgagctt
gcgccaaaacgcatagtatatataagctgcaatcccgcaacacaggttcgtgacctcacg
cttcttggcaaggcaggttatcaactcacccgactcacaccagttgatatgttcccccat
accgcccatgttgagacggtgtgtttgctgtcacacaaggggtag
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