Collinsella sp. zg1085: KPC83_03180
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Entry
KPC83_03180 CDS
T09607
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
coll
Collinsella sp. zg1085
Pathway
coll03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coll00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KPC83_03180 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
coll03021
]
KPC83_03180 (rho)
03019 Messenger RNA biogenesis [BR:
coll03019
]
KPC83_03180 (rho)
Transcription machinery [BR:
coll03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KPC83_03180 (rho)
Messenger RNA biogenesis [BR:
coll03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KPC83_03180 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
SAP
S1CSD-TOTE-2
Spore_III_AA
NACHT
AAA_25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QWT18145
LinkDB
All DBs
Position
760218..762473
Genome browser
AA seq
751 aa
AA seq
DB search
MTEQTNQDGASAPSGDAPVRRRRGRPRKSESQQAVTTPKTPKRRRGRPRKSETLAASSAP
VSHEVAAARALSQVSQAEIARQQRQEEERIAAKIASGDISQLIDPTLRPHRRGRKPKAYI
EAERAAAAALAAKQAEYIAGIDSKKAAPEQSPRLGASHGQQSEQPVVGVRSRDARPGRAE
RAQRGFTGDVASPFEIGQATERFMRASRQQLEQATVPARPHEPRQPVSPLESLGAIPAPD
AAAQTSLPREHEAQGGSSAAEGHTIRAHASEERARETLNSEGRTRDAQAVETRASERPVE
HHQHSQRTNQRQQNNRNKRNNRFNAPTEPTLTRDELSELKVADLRNKAKELNLDYLGKKK
AELVEEIYTAAARAEGFREIAGILDIDAQGFGYIRAQGYHHSREDAFVAANMIRAAALRP
GDYVVGTLRPLRANDKYPGLARIQSINGLDPDASRQRPKFSDLTPIYPDEPLRMEHGRDS
VTGRAIDIVAPVGKGQRGLIVSPPKAGKTTILKRICQSIAINNPEVHLICLLVDERPEEV
TDMQRSIKGDVVASTFDMPAENHTRISELVIERAKRLVELGEDVVVVLDSITRLARAYNL
AAPASGRILSGGVDSAALYPPKRFLGAARNIEHGGSLTILASALVDTGSKMDEVIFEEFK
GTGNMELKLDRDLADRRIFPAIDPVASGTRNEDLLIDEQMRPFMWGIRRVLANMNNTERA
AASFIKGLKATDNNQEFLVRSAKRAQDSELA
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgaacaaaccaatcaagatggagcatcagcaccttctggcgatgcgcctgtgcgt
cgtcgccggggtcgtccgcgcaagtctgaaagccagcaggcggtgacaacacctaagact
cctaagcgccgtcggggtcgtccgcgcaagtctgagacccttgccgcttcgtctgctcct
gtttcgcatgaagtggctgccgcgcgagcgcttagccaggtttcgcaggcagagattgcc
cgtcaacagcgtcaagaagaagagcgtattgctgcaaaaattgcctcaggtgatatttcg
cagcttatagacccaacgctgcgtcctcatcgtcgtggacgcaagccaaaggcctacatt
gaggcagagcgcgctgcagccgccgctttagctgctaagcaggcagaatacattgcaggc
attgattcaaaaaaggctgcgcctgagcaaagcccgcgtttaggtgcttctcacgggcaa
cagagtgaacagcctgtggtaggtgttcgtagtcgtgatgcacggcctggtcgcgcagag
cgtgctcagcgagggttcacgggagatgttgcttctccatttgagattggacaggctact
gagcgctttatgcgtgcatcacgccagcagcttgaacaggcaactgtgcccgcacgcccg
cacgagccacgccagccggtaagccccttggagtcgttaggagcaatacctgcaccagat
gcagctgctcagacatccttgccgcgcgagcacgaagctcaagggggtagcagtgcagct
gagggccacactatccgcgctcatgcttcagaggagcgtgctcgtgaaacgctcaacagc
gagggtcgcacacgtgatgcgcaggctgtagagacacgtgcttctgagcgtcctgtagag
catcatcagcacagccagcgaacaaatcagcgtcaacaaaataatcgcaataaacgaaat
aatcgttttaatgcgccaaccgagccaaccttaacacgtgatgaactctcagagcttaag
gttgctgacctgcgcaataaggcaaaagagctcaatcttgactatcttggtaagaaaaaa
gctgagcttgttgaagaaatctatacagccgcggcacgcgctgagggcttccgtgaaatt
gccggcattttagatattgatgcacagggctttggttatatccgtgcgcagggctaccat
catagccgtgaagatgcatttgttgcagctaatatgattcgtgctgctgctcttcgtccg
ggcgattatgtggtgggtactctgcgcccgcttcgtgcaaacgataagtatccgggtttg
gcgcgtattcaaagcattaatggcttggaccccgacgcttcacgtcagcgccccaaattt
agcgatttaacacctatttatcctgatgaaccgcttcgtatggagcatggccgtgattcg
gttactgggcgtgcaattgatattgtggcaccagttggaaaaggtcagcgcggtcttatc
gtgtcgccacccaaagctggtaagaccactattttgaagcgcatttgtcagtcgattgct
atcaataatccagaagtgcacctcatttgtttgctcgtagacgagcgccccgaagaggta
accgatatgcagcgctctattaagggtgatgtggttgcatcgacctttgatatgccagcc
gaaaaccatacacgcatctctgagttggttattgagcgtgcaaagcgcttggttgagcta
ggcgaggacgttgttgtggtacttgactccattacgcgtttggcgcgtgcatataacctc
gcagctccggcttcgggtcgtattctgtcgggcggtgttgattcggcggcgctgtatccg
cctaagcgcttcttgggcgctgcacgcaatattgagcacggtggttcgctcaccattttg
gcgtctgcactggtggataccggttctaaaatggacgaggttatctttgaggagttcaag
ggtaccggtaacatggagctcaagcttgaccgcgatttggcagatcgtcgtatcttccca
gccattgatccggttgcttctggcacccgcaacgaagatttgctcattgatgagcagatg
cgtccatttatgtggggtattcgtcgcgtgcttgccaatatgaataacactgaacgcgcg
gcagcaagctttatcaagggcttaaaggctacggacaacaatcaggaattcttggttcgc
tcagctaagcgggcgcaagattctgagcttgcataa
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