Collinsella sp. zg1085: KPC83_03230
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Entry
KPC83_03230 CDS
T09607
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
coll
Collinsella sp. zg1085
Pathway
coll03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
coll00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KPC83_03230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
coll03019
]
KPC83_03230
Enzymes [BR:
coll01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KPC83_03230
Messenger RNA biogenesis [BR:
coll03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KPC83_03230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
AAA_22
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
QWT18155
LinkDB
All DBs
Position
774739..776208
Genome browser
AA seq
489 aa
AA seq
DB search
MTTQASSTSTYTAPDTTTSFEELGLTGPMLQAVFDLAYTSPTPVQEAAIPAALSGADVLA
AAQTGTGKTAAFLLPTLARLEPLSHKAYRQRGKFGPQALIITPTRELASQIETNCRVIAK
RTGHRSVTVVGGVSYNPQRSALKRGCDILVATPGRLEDLLEQGACKLDQVQTLVLDEADR
MLDMGFLPTIKRLVHAVPKTRQTLLFSATLDDAAIGSIKNLVHNPVHIEIAPRTSTAETV
EQFILPVSLEAKNRVLPQLLKRFGSSHVIVFCRTKRRADTVCKRLVRAGIRSLAIHGDRS
QAQRERALDEFQRGRIEVLVATDVLARGIDIHGVNYVVNFDVPEEPVDYIHRIGRTGRAG
ELGWSLTIVTEQDIDDFYDIEALMKKTAKLLDVSGDGLVDCGEHPVVIDPYRHPKARIAG
KKEKKRRREQVAARIEKRYAQSGVPAGVLRRRTERASSSASTPVSYHQRRTRSSDNESTR
RRRYRSVVA
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgacaacacaagcatcatcaacatctacctatacagcacctgatacaacaacatcattt
gaggagcttggactgacaggccctatgcttcaagcagtttttgatttggcgtataccagc
cctacacccgtgcaagaagctgcaattcctgcagcactcagtggggcagacgtgcttgcc
gcagcgcaaacaggaactggcaaaacagcggcatttcttcttccaacgcttgcgcgctta
gaacctttatcacataaagcttatcggcaacgtggaaagtttggccctcaagcgcttatt
atcactccaacgcgtgagcttgcatcacaaattgaaacaaactgccgagttattgcaaag
cgaacgggacaccgcagcgttactgtggttggtggcgtgtcgtataacccgcagcgcagc
gctcttaagcgtggctgtgacatcttagttgcaacaccgggtcgccttgaagatttgctt
gagcaaggagcatgcaagcttgaccaggtgcaaaccttggtacttgatgaagcagaccgc
atgctcgatatgggttttttgcctaccataaaacggctcgtacacgctgtgcctaaaaca
cgccagacgctactcttttcagcaactcttgacgatgccgcaattgggtcaataaaaaat
ctcgtacataatcccgtgcacatagagattgctccgcgtacatcaacggctgaaaccgtg
gaacagtttatattgcctgtttcgcttgaggcaaaaaacagagtcttaccgcagctgctt
aagcgctttggtagctcacatgtaattgtattttgtcgaactaaacgacgtgcagatact
gtgtgtaagcgtcttgttcgcgccggtatacgtagtttggcaattcatggtgatagaagc
caagcgcagcgtgagcgagccctggacgagtttcaaagaggacgcattgaagtcttggtt
gcaactgatgtacttgctcgtggtattgatattcatggcgtgaactatgttgttaacttt
gacgttccagaagagccggtggattatattcatcgcattggtagaacaggccgtgcgggt
gagctggggtggtcgttaacgattgtgactgagcaagatattgatgacttctatgatatt
gaagctcttatgaaaaagacagcaaagctgcttgatgtctcgggtgatggcttagttgat
tgcggtgagcatcctgttgtaattgacccgtatcgccatccaaaagcacggattgcgggt
aaaaaggagaaaaaacgtcgccgtgagcaggtcgcagcacgtattgaaaagcgttatgct
caaagcggtgtacccgcaggcgtgcttcggcggagaaccgagcgagcaagttcatctgca
agcacacctgtgtcgtatcatcagaggcgcactcgctctagcgataatgaaagcacgaga
aggcgcaggtatcgctcggtggttgcgtga
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