Collinsella sp. zg1085: KPC83_05600
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Entry
KPC83_05600 CDS
T09607
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
coll
Collinsella sp. zg1085
Pathway
coll03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
coll00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KPC83_05600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
coll03021
]
KPC83_05600
03400 DNA repair and recombination proteins [BR:
coll03400
]
KPC83_05600
Enzymes [BR:
coll01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KPC83_05600
Transcription machinery [BR:
coll03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KPC83_05600
DNA repair and recombination proteins [BR:
coll03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KPC83_05600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_A_CTD
HHH_5
Fiji_64_capsid
Motif
Other DBs
NCBI-ProteinID:
QWT17317
UniProt:
A0A975SCR7
LinkDB
All DBs
Position
complement(1316189..1320646)
Genome browser
AA seq
1485 aa
AA seq
DB search
MADFEATDFDAVRISLASADQIRSWSHGEVKKPETINYRTLKSEKDGLFCEKIFGPAKDW
ECSCGKYKGIRFKGIVCERCGVEVTSAKVRRERMGHIELAAPVSHIWYFKSPTSFPMSRL
LDIKSKDLEKVLYFASYIITEVDVEAREADAEDLREELAADLEEIDAECARQIESLKAQG
DPANFDEFSDEEPLTPEEVAAGIIDIEEEMKDERQLRQDAFTAFMKLNSRDLVSDEPLFR
EMKRYYSMYFKGGMGAEAIRELLSVIDLESEAEQLKAIIADVDGQKQRREKAVKRLEVVD
AFLKGKNDPANMILDVIPVIPPDLRPMVQLDGGRFAASDLNDLYRRVINRNNRLKRLLDL
DAPAIIVNNEKRMLQESVDALFDNGRRGRPVSGRGGRPLKSLAEALKGKQGRFRQNLLGK
RVDYSGRSVIVTDPKLKLHQCGLPKTMALELFKPFVMKRLVELGKVENIKGAKRAIERGA
SFVWDILEEVIAGRLVLLNRAPTLHRLSIQAFEPVLVEGNAIHLHPLVCAPFNADFDGDQ
MSVHVPLSLQAQAEARVLMLSSNNLRSPASGKPVNIPSQDMIIGVYYLTQARDGLPGEGR
IFASFEDALRAYDARSEVDLQAKIQVRVDSFDANVEDNGKLIFRVRDERNHTVDYDVSGT
KTIRFETTVGRIIFNSQCLPNDYEFINYKLVKGDVAKLVADCCDRYPQAQVGPILDAIKY
SGFHYATRAGLTISLWDALIPEDKQQILADAQNKVDQINEYYEEGFLNEQERHIEVVNEW
TAATDEVAAKMLDLFDEENPIYMMADSGARGSKTQLRQLGGMRGLMADMSGETIDLPIKA
NFREGLLPLEYFISTYGARKGLVDTASHTSDSGYLTRRLVDVAQDVIVREEDCGTDEGVT
YNLIIPGTNNMNVDLVGRCFAEDTLDAKGNLLFARGSYLESEQDIQTLIDAGLTTVLLRA
LLTCHSQYGVCQKCYGWDLSTRRPVAIGTAVGIIAAQSIGEPGTQLTMRTIHSGGVAGVD
DITQGLPTVGRMFDVVGNVNEKILGREADLAPFSGRLSIKPEKSEYILTLTDLEDATRVL
EEKRVPASVRFMPGIEDGCAVRAGDQITKGFVNFRNLRKLTDIESTMHTFVESVKDVYTS
QGVDLNDKHIEVIARQMLRRVQITNPGDSRYLLGQYVDRYEFAHEVERVAREGGATPAAE
PVILGTLKVASSIDSWLSSASFIRTAGVLTEAAIEGKVDRLLDLKSNVIVGKKIPVGTGL
KPYHDAQLTYRTSEGYRSVESSAGGSKQLPDWAPESLKELDAQLPQELEWTGYSEFGASE
GVFTRNGRSISNEDAHLYLFDDLGVSQRWTNKFSEVGIETVGDLVGKSEEDLLRIDGIGA
KAIEELRDGLEARDLLYILESSDDVADEEDLTQLLQMVFSPDGPDDILLGTSAPRSHFDS
DEEMLGGPVDSAKIGGVINEDMASLDELLNQLVESEDESADEDDE
NT seq
4458 nt
NT seq
+upstream
nt +downstream
nt
gtggcagattttgaagctactgattttgatgcggtacggatttctcttgcctccgcagac
cagattcgctcgtggtcgcacggtgaggtcaagaagcccgaaaccatcaactatcgcacc
ttaaagtctgagaaagacggtcttttctgcgagaagatttttggtccggctaaagactgg
gagtgctcctgcggtaaatacaagggcatccgttttaagggtattgtctgcgagcgctgc
ggcgttgaggtaacctcagccaaggtgcgccgcgagcgtatgggtcacattgagctggcc
gctccggtaagccatatctggtattttaagagccctaccagcttccccatgagccgcctt
ttagacatcaagtcaaaagaccttgagaaggtactttattttgcgagctacatcatcact
gaggttgatgttgaggcacgtgaggctgatgctgaggatttgcgcgaagagctggcagca
gaccttgaagagattgatgccgagtgcgcccgccagattgagagcttaaaagctcagggt
gaccctgctaactttgatgagttctctgatgaagagcccctgaccccagaagaggttgca
gcaggcattatcgacatcgaagaagagatgaaagacgagcgccagcttcgccaagatgcc
tttacggcattcatgaagctgaactcccgtgatttggtctctgacgagccgcttttccgc
gagatgaagcgctactattcaatgtatttcaagggtggcatgggcgctgaggcaattcgt
gagcttttgagcgttattgaccttgagtctgaggcagagcagcttaaagccattattgcc
gatgttgatggtcaaaagcagcgtcgtgagaaggccgttaagcgccttgaggtagttgat
gccttcttaaagggcaagaacgaccccgcaaacatgattcttgacgtcattccggttatt
ccgcccgatttgcgtcctatggtgcagctcgatggtggtcgttttgctgcttctgactta
aacgatttgtaccgccgtgttattaaccgtaataaccgcttgaagcgcttgcttgacctc
gatgcacctgccatcattgttaacaatgagaagcgcatgctgcaagagtcggttgatgcc
ctctttgataacggtcgtcgtggtcgtccggtgtctggtcgtggtggccgtccgttgaag
tcgctcgctgaggcgctcaagggcaagcaaggtcgcttccgtcagaacttgttaggtaag
cgcgttgactattcgggtcgctcggttatcgttaccgaccccaagcttaagctgcatcaa
tgcggtctgcctaagaccatggcgctggagcttttcaagccctttgttatgaagcgtctg
gttgagctcggcaaggttgaaaacattaagggcgcaaagcgtgctattgagcgcggcgcc
agctttgtgtgggacattctcgaagaggttattgctggtcgcttggtgctgcttaaccgc
gccccgacgcttcaccgactctccattcaggcatttgagccggtgctggttgagggtaac
gcaatccatttgcatcctctggtatgcgcaccgtttaacgccgacttcgacggtgaccaa
atgtctgttcatgtgccgttgtcgcttcaggcccaggctgaggcccgcgtgctgatgctt
tcgtctaataaccttcgttcgcctgcatcgggaaagcctgtcaatattccgtcgcaagac
atgattattggcgtgtactacctcacacaggcgcgtgatggtttgcctggcgagggtcgt
atttttgcgagctttgaagacgccttgcgtgcctatgatgcgcgctctgaggtagacctt
caggccaagattcaggtgcgtgttgactccttcgacgctaatgttgaggataacggtaag
ctgattttccgtgttcgcgacgagcgcaaccacacggttgactacgatgtgtccggtact
aagacaattcgttttgaaaccaccgttggtcgcatcattttcaacagccagtgcctgccc
aacgactacgagtttattaactataagctggtcaagggcgatgtagctaagcttgtagcc
gattgctgcgatcgttatccacaggcgcaggttggccccattttggacgctattaagtat
tcgggcttccactatgcaacgcgcgctggtttgaccatctcactttgggacgcgctgatt
cctgaagataaacagcagattttggctgatgctcaaaacaaggttgaccagattaacgaa
tactatgaggaaggcttcctgaacgagcaggagcgccacatcgaggttgttaacgagtgg
acggctgcaactgatgaggtagctgctaagatgctcgacctctttgacgaggaaaacccc
atctacatgatggctgactcgggcgctcgtggttctaagacgcagctgcgccagctgggt
ggtatgcgtggcttgatggcagacatgtcaggcgaaaccatcgacctccccattaaggca
aacttccgcgaaggtctgttgccgcttgagtacttcatctcaacctatggtgctcgtaag
ggtctggttgacacagcctcgcacacgtctgactcgggttatctgacccgccgtctggtt
gacgttgcgcaagacgttattgtgcgcgaggaagactgcggtaccgatgagggtgtaacc
tacaacctcatcattccaggcaccaacaacatgaatgttgatttggttggtcgctgcttt
gctgaggatacgctcgatgcgaagggcaatttgctctttgcccgcggctcatatctggag
tcagagcaggatattcaaacgcttatcgacgcagggcttactaccgtgcttttgcgtgcg
ctgcttacctgccactctcaatatggcgtatgtcagaagtgctacggctgggatttgtca
acccgtcgtccggttgccattggtactgcagtgggtattattgctgctcagtccatcggc
gagccgggtactcagcttacgatgcgtaccattcactccggtggtgttgcaggtgttgac
gacattacgcagggtcttcctacggttggccgtatgtttgacgttgttggcaacgttaat
gaaaagattcttggtcgcgaggcagatttggctccgttctctggtcgtttgtctatcaag
cctgagaagtctgagtacattttgaccttgaccgaccttgaggacgcaacgcgtgttctt
gaagagaagcgtgttccagcatcggtacgctttatgccaggcatcgaggatggttgcgct
gtgcgtgcgggcgaccagattaccaagggctttgtcaactttagaaacctgcgcaagctg
accgacattgagtccaccatgcacacgtttgtggagagcgtgaaggatgtctacaccagc
cagggcgttgacctcaacgacaagcacattgaagttattgcacgtcagatgcttcgccgt
gtacaaattaccaacccaggtgattcacgttatctgctaggtcagtacgttgatcgctat
gagtttgcccatgaggttgagcgcgtagctcgcgagggtggcgctacccctgcggctgag
ccagttatcttgggtacgctcaaggttgcttcaagcattgattcatggttgagctcggca
tcgtttattcgcacggccggcgtattgactgaggctgctattgagggcaaggttgaccgt
ttgctcgaccttaagtccaacgtcattgttggtaagaagattccggtgggcactggtctt
aagccgtatcacgatgcacagttgacctatcgcacctctgagggctatcgttcggttgag
agttctgctggcggctcaaagcagttgcctgattgggctcccgagagcttgaaagagctt
gacgctcagttgccgcaggagcttgagtggactggctattctgagtttggtgcaagtgaa
ggtgtctttacgcgcaacggacgcagcatctcaaacgaagatgcccacctctatctcttt
gatgacttgggagtttctcagcgctggaccaataagtttagcgaggttggcatagagaca
gttggagacttggtaggtaagtctgaggaagatttgctccgcatcgacggcattggtgcc
aaagcaattgaggagttgcgcgatggtcttgaggcacgcgatttgctctatatccttgag
agttccgatgatgtggctgacgaagaggatttgacgcagctgttgcagatggtcttctcg
cctgatggtccagatgacattcttctgggtacgagcgcaccgcgttcacactttgactct
gacgaagagatgcttggtggtccggttgatagcgcaaagattggcggcgttatcaacgaa
gatatggcgtcactcgatgagttgctcaatcagctcgtggagtctgaagacgaaagcgct
gatgaggacgacgaatag
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