Colwellia sp. PAMC 21821: A3Q33_00160
Help
Entry
A3Q33_00160 CDS
T04816
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
colw
Colwellia sp. PAMC 21821
Pathway
colw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
colw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3Q33_00160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
colw03019
]
A3Q33_00160
03400 DNA repair and recombination proteins [BR:
colw03400
]
A3Q33_00160
Enzymes [BR:
colw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A3Q33_00160
Messenger RNA biogenesis [BR:
colw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A3Q33_00160
DNA repair and recombination proteins [BR:
colw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A3Q33_00160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
RecQ_Zn_bind
Helicase_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
ARD42879
LinkDB
All DBs
Position
42112..43908
Genome browser
AA seq
598 aa
AA seq
DB search
MDINTAKSVLQNTFGYADFRHQQANIISEIINGADVFTLMPTGGGKSLCYQIPAIVLQGV
GIVVSPLIALMKDQVDALKLQGVKAEFLNSSQDHEEQRRVEQLITSGNVDLLYVAPERLL
SDYFLSLLDRVTIALFAFDEAHCVSQWGHDFRPEYQKLSIIGHRYPNTPKIALTATADMK
TRDEIVQVLNLTGAKTFVHSFDRPNIQYRISEQKNSKEQLLKFINTEHENDAGIVYCLSR
KSVESTAQWLTEQGKTALPYHAGLASDLKDNNQQRFLREDGIIIVATIAFGMGIDKPDVR
FVAHLNLPKSIEAYYQETGRAGRDGMPANTWLAYGMQDVIKLKQMASQSDGNEQFKFITQ
RKIDALLGYCEVSSCRRQVLLNYFGETLSEPCGNCDNCLNPPVTWDGTSAAQKALSTVYR
TGQRFGVGHQIDVLTGKKTPKITSLNHHQLSTYNIGSELTAMEWQTVFRQLISMGYLAVE
IDYGVLKLTEKARPLLKGECAIQLKVQKYKKPKQAQNKKQAIESDLSADEQVNFEKLKQQ
RSLWAKERNVPAYVVFHDATLMDIARINPKNSNQLLEVNGLGKTKLELYGEKIIALLT
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
ttggatatcaacacagcaaaatcagttttacaaaacaccttcggttacgctgattttcgt
caccaacaagccaacataattagtgaaattattaatggcgctgatgtttttacgcttatg
ccgaccggtggaggaaaatcattatgctaccaaataccggctattgttttgcaaggggtt
ggtattgttgtatcacccctgatcgccttgatgaaagatcaagttgatgcgctaaagtta
caaggggtaaaagcagagtttttaaattcatcacaagatcatgaagaacagcgccgtgtt
gaacagcttataacctcgggcaatgtcgacttattatatgtagcgccagaaaggctctta
agtgattattttctatcgctgcttgatcgagttaccatcgcattatttgccttcgacgaa
gcacattgtgtatcgcaatggggccacgattttaggcctgagtatcaaaaactctctatc
ataggtcaccgataccctaacacacccaaaatcgccttaaccgcaacagcggatatgaaa
acccgtgatgaaatcgtacaggttttaaatttaacgggtgctaaaacttttgtacatagc
tttgatagacccaatattcaatatcgtattagtgaacagaaaaatagcaaagagcagcta
cttaaatttattaataccgaacatgaaaatgatgccggtattgtctattgtctttcacga
aaatcagtagaatcaaccgctcagtggttaacggagcaaggaaaaacggctttaccttat
catgctggtttagctagcgatcttaaggataataaccaacagcgattcttaagagaagat
ggcattataatcgttgctaccattgcatttggaatgggtattgataagcctgatgtgcga
tttgttgcgcatttaaatttaccaaaaagtattgaagcttattatcaagaaaccgggcgt
gctggtcgagatggcatgccagccaacacttggttagcttatggtatgcaagatgttatc
aaactaaaacaaatggcgagtcaaagtgatggtaatgaacagtttaaatttattactcag
cgtaaaattgacgcgctgctgggctattgtgaagttagctcctgtcgcagacaagtgctg
ttaaactattttggtgaaaccttatcagagccttgcggaaattgtgataactgcttgaac
cctcctgtaacctgggatggcaccagtgctgcacaaaaagccctttcaacggtttatcga
acagggcaaaggtttggtgttggccatcaaattgatgtgttaaccggcaaaaaaacaccc
aaaattactagcctaaatcaccatcaactttccacttataatattggcagcgaacttacg
gcaatggaatggcaaacggtatttagacaacttatttccatggggtatttagcggttgaa
atagattatggcgtgttaaagttaactgaaaaagcgcgacctttattaaaaggtgaatgt
gctattcagcttaaagtgcaaaaatataaaaaacccaagcaagctcaaaacaaaaaacaa
gctattgagagtgacttatcggctgacgagcaagttaactttgaaaaacttaagcaacaa
cgatctttatgggcaaaagagcgaaacgttccagcatatgttgtttttcatgacgcaacc
ttaatggatatagcgcgaataaatcccaaaaattcaaaccaattacttgaagttaatggt
ttaggtaaaacaaagcttgagctttatggtgaaaaaattattgccttgttaacgtaa
DBGET
integrated database retrieval system
